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Carg16346 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16346
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWIB domain-containing protein
Genome locationCarg_Chr19:6060058..6061705
RNA-Seq ExpressionCarg16346
SyntenyCarg16346
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]5.6e-68100Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]1.6e-6799.28Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKKII+CDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]5.8e-6596.38Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]8.0e-6797.83Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KP+DKKII+CDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]3.3e-6086.96Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

TrEMBL top hitse value%identityAlignment
A0A6J1D4Q4 uncharacterized protein LOC1110172911.6e-5281.16Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

A0A6J1EIX1 uncharacterized protein LOC1114346991.1e-5683.33Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPRGIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

A0A6J1GL33 uncharacterized protein LOC1114552447.8e-6899.28Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKKII+CDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

A0A6J1IAA1 uncharacterized protein LOC1114710822.8e-6596.38Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

A0A6J1JNZ3 uncharacterized protein LOC1114861971.1e-5683.33Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPRGIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp272.1e-0943.64Show/hide
Query:  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIF
        KP ++SP++   +G  ++SR + +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Subjt:  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIF

Q05024 Protein TRI19.4e-1048.15Show/hide
Query:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGK
        +S  +Q  +G+ E+ RT+ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Subjt:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGK

Q08747 Upstream activation factor subunit UAF304.7e-0940.58Show/hide
Query:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSH
        +S  + +L+G  E++RTE ++ +W +IK HNLQ P++KK I+CDEKL+ I G        E+  +++SH
Subjt:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSH

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein7.4e-1843.3Show/hide
Query:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF
        RT+   +A+ +    + + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ P++KK I CD+KLK IF GKD+VG  EI  L+S HF
Subjt:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.2e-3061.68Show/hide
Query:  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAG
        P   LR  R +T A+ S++ TA++ R PRGIMKPR +SPEMQ +V  PEI+RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKKIF G+D VGFLEIA 
Subjt:  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAG

Query:  LISSHFL
        LI  HFL
Subjt:  LISSHFL

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.1e-1847.42Show/hide
Query:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF
        R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Subjt:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF

AT3G03590.1 SWIB/MDM2 domain superfamily protein3.9e-1940Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR--GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHN
        M+ V+  V      L+A AS   SS+        P  +          +   + + + PR  GI K   +SP +   +G  E SRT+A+K IWT+IK H+
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR--GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHN

Query:  LQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL
        LQ P+DK+ I CDE LK IF GKD+VGFLEI+ L+S HF+
Subjt:  LQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

AT4G34290.1 SWIB/MDM2 domain superfamily protein6.4e-3056.56Show/hide
Query:  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKK
        S++  S  HP      NLR  R +T A+A++    TT  +R+PRGIMKPR +S  MQ +VG PEI RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKK
Subjt:  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKK

Query:  IFGGKDEVGFLEIAGLISSHFL
        IF GK+ VGFLEIA LI  HFL
Subjt:  IFGGKDEVGFLEIAGLISSHFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTT
GCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGG
CGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATGTGC
GACGAGAAGCTGAAGAAAATTTTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTT
GCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGG
CGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATGTGC
GACGAGAAGCTGAAGAAAATTTTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGATGATTTGAAGAATGGAAGATGAA
CTTTGTTTGTTTGTTTTGGGAGTCGCTCAGGTATTATTGCTCACTGAGTCCTGCAGTTCATAGCCCTCTTTTTGTTAAGTAGTTAGGATAGAGAAGGAAGAAGCTTTTGT
AAGAACATGTTTATGTAGGGATTGTTCTATGGAAATCTTTGTTAGTCCTTAGTTTGGGTAAAAATGTGTTACTTTTGTACTCT
Protein sequenceShow/hide protein sequence
MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMC
DEKLKKIFGGKDEVGFLEIAGLISSHFL