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Carg16418 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16418
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear pore complex protein NUP43
Genome locationCarg_Chr12:7227263..7229049
RNA-Seq ExpressionCarg16418
SyntenyCarg16418
Gene Ontology termsGO:0031080 - nuclear pore outer ring (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586038.1 Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia]4.6e-7899.29Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGT FAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
KAG7020814.1 Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-78100Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
XP_022937892.1 nuclear pore complex protein NUP43 [Cucurbita moschata]1.2e-78100Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
XP_022969681.1 nuclear pore complex protein NUP43 [Cucurbita maxima]8.7e-7797.86Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEV YDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDID QHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
XP_023538014.1 nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]2.3e-7798.57Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQ PSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
TrEMBL top hitse value%identityAlignment
A0A0A0LJ46 Uncharacterized protein2.0e-7495Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        +PVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
A0A5D3BAS9 Nuclear pore complex protein NUP437.4e-7494.96Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEG+KTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
        +PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
A0A6J1DUZ0 nuclear pore complex protein NUP432.3e-7595.71Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLE SK SN SPCESEVWEVHYDPYIKS NIGGMSSSQILPAMICSEDGI+TS+EQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
A0A6J1FCG9 nuclear pore complex protein NUP435.9e-79100Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
A0A6J1HYH3 nuclear pore complex protein NUP434.2e-7797.86Show/hide
Query:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
        ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEV YDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK
Subjt:  ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGK

Query:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        QPVELLAEPCAINGFDID QHPSEVICNLEWESVAILSRP
Subjt:  QPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
SwissProt top hitse value%identityAlignment
Q24JJ9 Nuclear pore complex protein NUP434.8e-5469.78Show/hide
Query:  SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQ
        S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +SSS+ILP M CSEDGI+  IEQG++
Subjt:  SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQ

Query:  PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        P+ELLAEPCAIN FDIDRQ+P +VIC+LEWES+A+ SRP
Subjt:  PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Arabidopsis top hitse value%identityAlignment
AT4G30840.1 Transducin/WD40 repeat-like superfamily protein3.4e-5569.78Show/hide
Query:  SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQ
        S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +SSS+ILP M CSEDGI+  IEQG++
Subjt:  SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQ

Query:  PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        P+ELLAEPCAIN FDIDRQ+P +VIC+LEWES+A+ SRP
Subjt:  PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCA
GCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTG
GTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGC
GCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGA
mRNA sequenceShow/hide mRNA sequence
GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCA
GCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTG
GTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGC
GCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGT
CTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGT
TTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTTAGTTACACCACGTAATTTGAACTGAATTTTGATATGGATTATCATATTGGTCTTGACCATATCAGGGTGATA
TGAATGATGTAACTTTGCATTGTGTTTTTAATGTATTTCTTCTTTTTTTCATTCTACTTCTCGACGTGACGTTTTTACTTTTTAATTTTTATACCAATTAATGTTTACAG
AATGTGAAGTACTTAGCTGAGCTTTATTGGAAATTTTTAATTGGCATTAT
Protein sequenceShow/hide protein sequence
ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPC
AINGFDIDRQHPSEVICNLEWESVAILSRP