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Carg16420 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16420
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin-remodeling ATPase INO80
Genome locationCarg_Chr12:7233250..7235182
RNA-Seq ExpressionCarg16420
SyntenyCarg16420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013676.1 hypothetical protein SDJN02_23843, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-2350.7Show/hide
Query:  RCASEEAEPQRG------VDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVL
        RC S+EAEP+RG      +D RR   +    R+     +    E  + + N G LFS PTNVGHHNPPPS PSVLA   S   +  G  P   PFG SVL
Subjt:  RCASEEAEPQRG------VDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVL

Query:  TGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLF
        TGTPP  YP+RGTARR TH P++G++T CN PD  LADIV +
Subjt:  TGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLF

KAG7016605.1 putative RNA helicase SDE3 [Cucurbita argyrosperma subsp. argyrosperma]9.8e-2469.57Show/hide
Query:  GDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGL
        G LF SPTNVG+HNPPPS  +VLAGT SF+QS +       PFG SVLTGTPPRVYPLRG ARR TH PV GS+T CNDPD  L DIV FGL
Subjt:  GDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGL

KAG7020717.1 WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1550.5Show/hide
Query:  FSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFH
        FSSPTNVG+HNPP                +V PPPNPPP   ++LTGTP  VYPLRG      HCP++ S+T C+ P+  LADIVLFGL  S  P K   
Subjt:  FSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFH

Query:  T
        T
Subjt:  T

KAG7020816.1 hypothetical protein SDJN02_17504, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-89100Show/hide
Query:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVS
        MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVS
Subjt:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVS

Query:  VLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFHTLT
        VLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFHTLT
Subjt:  VLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFHTLT

KAG7026138.1 hypothetical protein SDJN02_12637, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-0956.58Show/hide
Query:  NVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFP---SKDFHTL
        +VG PPN P  G S LTGTPPRVYPL  T R+ TH P++ S+T CN  D  LADIVL GL  S FP       HTL
Subjt:  NVGPPPNPPPFGVSVLTGTPPRVYPLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFP---SKDFHTL

TrEMBL top hitse value%identityAlignment
A0A6J1EAZ7 Chromatin-remodeling ATPase INO807.1e-0470.59Show/hide
Query:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR
        M+L+LDTGRCAS+EA+P+R VDTR CA+KD G R
Subjt:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR

A0A6J1EBE0 Chromatin-remodeling ATPase INO807.1e-0470.59Show/hide
Query:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR
        M+L+LDTGRCAS+EA+P+R VDTR CA+KD G R
Subjt:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR

A0A6J1EEE8 Chromatin-remodeling ATPase INO807.1e-0470.59Show/hide
Query:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR
        M+L+LDTGRCAS+EA+P+R VDTR CA+KD G R
Subjt:  MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTAAAGCTAGACACCGGGCGATGTGCCAGCGAGGAGGCTGAGCCCCAAAGGGGGGTGGACACGAGACGGTGTGCCAACAAGGACGCTGGGCCCCGAAGCTTTGC
AGAATGTATTCAAGTCAACCAATTGGAGTGGGTTTATATTATGAAGAACGAGGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGGGC
CCAGTGTCCTCGCTGGCACTCGTTCCTTTATCCAATCGAATGTGGGACCGCCCCCAAATCCACCCCCCTTTGGGGTCAGCGTCCTTACTGGCACACCGCCTCGTGTCTAC
CCCCTTCGAGGAACAGCGAGAAGGCCAACACATTGTCCGGTGACTGGCTCTAATACCAATTGTAACGACCCAGATTCACTTCTAGCAGATATTGTCCTTTTTGGGCTTTT
CCCTTCGAGCTTTCCCTCAAAAGATTTCCACACCCTCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGATATTAAAGCTAGACACCGGGCGATGTGCCAGCGAGGAGGCTGAGCCCCAAAGGGGGGTGGACACGAGACGGTGTGCCAACAAGGACGCTGGGCCCCGAAGCTTTGC
AGAATGTATTCAAGTCAACCAATTGGAGTGGGTTTATATTATGAAGAACGAGGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGGGC
CCAGTGTCCTCGCTGGCACTCGTTCCTTTATCCAATCGAATGTGGGACCGCCCCCAAATCCACCCCCCTTTGGGGTCAGCGTCCTTACTGGCACACCGCCTCGTGTCTAC
CCCCTTCGAGGAACAGCGAGAAGGCCAACACATTGTCCGGTGACTGGCTCTAATACCAATTGTAACGACCCAGATTCACTTCTAGCAGATATTGTCCTTTTTGGGCTTTT
CCCTTCGAGCTTTCCCTCAAAAGATTTCCACACCCTCACATAA
Protein sequenceShow/hide protein sequence
MILKLDTGRCASEEAEPQRGVDTRRCANKDAGPRSFAECIQVNQLEWVYIMKNEGDLFSSPTNVGHHNPPPSGPSVLAGTRSFIQSNVGPPPNPPPFGVSVLTGTPPRVY
PLRGTARRPTHCPVTGSNTNCNDPDSLLADIVLFGLFPSSFPSKDFHTLT