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Carg16452 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16452
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like
Genome locationCarg_Chr12:7552239..7553344
RNA-Seq ExpressionCarg16452
SyntenyCarg16452
Gene Ontology termsGO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588286.1 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5496.49Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYA
        ILRGVSFK+  G A
Subjt:  ILRGVSFKLFLGYA

KAG7020848.1 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.2e-67100Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYAAMEVRTWYCFYQIIK
        ILRGVSFKLFLGYAAMEVRTWYCFYQIIK
Subjt:  ILRGVSFKLFLGYAAMEVRTWYCFYQIIK

XP_022932753.1 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucurbita moschata]7.3e-5495.61Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNE EDESDVLIECRNVYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYA
        ILRGVSFK+  G A
Subjt:  ILRGVSFKLFLGYA

XP_023001882.1 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucurbita maxima]6.2e-5393.22Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN----EDEDESDVLIECRNVYKSF
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN    EDEDESDVLIECRNVYKSF
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN----EDEDESDVLIECRNVYKSF

Query:  GEKHILRGVSFKLFLGYA
        GEKHILRGVSFK+  G A
Subjt:  GEKHILRGVSFKLFLGYA

XP_023520683.1 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-5496.49Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYA
        ILRGVSFK+  G A
Subjt:  ILRGVSFKLFLGYA

TrEMBL top hitse value%identityAlignment
A0A0A0LY39 ABC transporter domain-containing protein7.4e-4481.74Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIV-CNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEK
        MVS+SGSVFFPLTVP CSSRSRKVAV+D HNSFC K KDQRRIV CNCIAPPP+FKSD SS VN NDSF SEHLS +NED++ESDVLIECRNV+KSFGEK
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIV-CNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEK

Query:  HILRGVSFKLFLGYA
        HILRGVSFK+  G A
Subjt:  HILRGVSFKLFLGYA

A0A1S3B8N5 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X16.7e-4584.35Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIV-CNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEK
        MVSISGSVFFPLTVP+CSSRSRKVAVLD HNSFC K KDQRRIV CNCIAPPP+FKSD SS VN NDSF SEHLS +NED+DESDVLIECRNV+KSFGEK
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIV-CNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEK

Query:  HILRGVSFKLFLGYA
        HILRGVSFK+  G A
Subjt:  HILRGVSFKLFLGYA

A0A6J1CBM2 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic2.4e-4280.7Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSV FPLT P+CSS SRKVAVLD  NSFC KKK+QRRIVCNCIAPPP+FKSD SS VN NDSF SE+L  DNE EDESDVLIECR+VYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYA
        ILRGVSFK+  G A
Subjt:  ILRGVSFKLFLGYA

A0A6J1F2M5 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like3.5e-5495.61Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNE EDESDVLIECRNVYKSFGEKH
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKH

Query:  ILRGVSFKLFLGYA
        ILRGVSFK+  G A
Subjt:  ILRGVSFKLFLGYA

A0A6J1KHV9 protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like3.0e-5393.22Show/hide
Query:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN----EDEDESDVLIECRNVYKSF
        MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN    EDEDESDVLIECRNVYKSF
Subjt:  MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDN----EDEDESDVLIECRNVYKSF

Query:  GEKHILRGVSFKLFLGYA
        GEKHILRGVSFK+  G A
Subjt:  GEKHILRGVSFKLFLGYA

SwissProt top hitse value%identityAlignment
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic1.4e-1049.35Show/hide
Query:  QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSE--HLSRDNEDEDESDVLIECRNVYKSFGEKHILRGVSFKLFLGYA
        +R++ C CIAPP    +D +      DS T     + ++   E++SDVLIECR+VYKSFGEKHIL+GVSFK+  G A
Subjt:  QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSE--HLSRDNEDEDESDVLIECRNVYKSFGEKHILRGVSFKLFLGYA

Arabidopsis top hitse value%identityAlignment
AT1G65410.1 non-intrinsic ABC protein 119.6e-1249.35Show/hide
Query:  QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSE--HLSRDNEDEDESDVLIECRNVYKSFGEKHILRGVSFKLFLGYA
        +R++ C CIAPP    +D +      DS T     + ++   E++SDVLIECR+VYKSFGEKHIL+GVSFK+  G A
Subjt:  QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSE--HLSRDNEDEDESDVLIECRNVYKSFGEKHILRGVSFKLFLGYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACAGTGCCCGATTGTTCCTCTCGATCGCGTAAAGTAGCTGTTCTTGATAATCACAATTCGTTTTGTTTGAAGAA
AAAGGATCAGAGAAGGATTGTTTGTAATTGCATTGCGCCTCCGCCGTTCTTCAAGAGTGATGGATCATCTACCGTAAATTTCAATGACTCATTTACATCGGAACATTTAA
GCCGAGATAATGAGGACGAGGACGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAGTCCTTTGGAGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGTTGTTT
TTGGGTTACGCTGCTATGGAAGTGAGAACGTGGTACTGTTTTTACCAGATTATCAAATAA
mRNA sequenceShow/hide mRNA sequence
TTAAGTGGGGTTTTTTCTGTACATTCCCATCTCGTTTCTTCATCTTTCCAAATATTTTATCGGCGAGTTCTGCTGCATTTCGTGTTTATTCCGATGCGGAATTTGGTAAC
CCAGGGGGGTTTTTGCTCATAATCCTATTTAGGTTTCTTTAAGCTTGTGAATTTTCGATTGCGTTGATACTATAAAGTGCGTTGGAGGCTGATTTTGGACCGATTGTATC
GTGGTTCAGCTTCAAAATCTCAGAATTCACTTACCCTTTTACGGGTTAATCTTAGGAACATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACAGTGCCCGATTGT
TCCTCTCGATCGCGTAAAGTAGCTGTTCTTGATAATCACAATTCGTTTTGTTTGAAGAAAAAGGATCAGAGAAGGATTGTTTGTAATTGCATTGCGCCTCCGCCGTTCTT
CAAGAGTGATGGATCATCTACCGTAAATTTCAATGACTCATTTACATCGGAACATTTAAGCCGAGATAATGAGGACGAGGACGAGTCTGATGTTCTCATTGAGTGTAGAA
ATGTCTACAAGTCCTTTGGAGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGTTGTTTTTGGGTTACGCTGCTATGGAAGTGAGAACGTGGTACTGTTTTTACCAGATT
ATCAAATAA
Protein sequenceShow/hide protein sequence
MVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDESDVLIECRNVYKSFGEKHILRGVSFKLF
LGYAAMEVRTWYCFYQIIK