CuGenDBv2

Gene ID	Carg16516
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	S-protein homolog
Genome location	Carg_Chr14:13309637..13310071
RNA-Seq Expression	Carg16516
Synteny	Carg16516
Gene Ontology terms	GO:0060320 - rejection of self pollen (biological process) GO:0005576 - extracellular region (cellular component)
InterPro domains	IPR010264 - Plant self-incompatibility S1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018836.1 Self-incompatibility protein S1, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-78

100

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK
        MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK

Query:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
Subjt:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

TYK17379.1 self-incompatibility family protein [Cucumis melo var. makuwa]

1.6e-73

94.44

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK
        MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTTSQFSCTVKLDRTRK
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK

Query:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        SFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

XP_004134017.2 S-protein homolog 6 [Cucumis sativus]

1.5e-71

93.71

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Query:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTRKS
        MKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTRKS
Subjt:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTRKS

Query:  FDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        FDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  FDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

XP_016898907.1 PREDICTED: uncharacterized protein LOC103483510 [Cucumis melo]

3.9e-72

93.79

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR
        MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTR
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR

Query:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        KSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

XP_038876719.1 S-protein homolog 6-like [Benincasa hispida]

1.3e-72

92.96

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Query:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSF
        MKIL+SILMLI FPFF+VF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTTSQFSCTVKLDRTRKSF
Subjt:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSF

Query:  DAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        DAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  DAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6V3 S-protein homolog

8.8e-62

94.92

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Query:  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLE
        EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKC+WLV+E
Subjt:  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLE

Query:  DGFYFSDDEVNWKKDFSW
        DGFYFSDDEVNWKKDFSW
Subjt:  DGFYFSDDEVNWKKDFSW

A0A1S4DSD2 S-protein homolog

1.9e-72

93.79

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR
        MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTR
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR

Query:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        KSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

A0A5A7U6C9 S-protein homolog

1.9e-72

93.79

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR
        MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTR
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTR

Query:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        KSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  KSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

A0A5D3D3G0 S-protein homolog

7.6e-74

94.44

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Query:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK
        MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTTSQFSCTVKLDRTRK
Subjt:  MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRK

Query:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        SFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  SFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

A0A6J1GCS3 S-protein homolog

9.3e-72

91.55

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Query:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSF
        MKIL+SILMLI FPFFTVFMSLLPP+ LYGIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSW V+TNFWITTTSQFSCTVKLDRTR+SF
Subjt:  MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSF

Query:  DAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        DAFKVPRDIYRCSA RKC+WLV+EDGFYFSDDEVNWKK+FSW
Subjt:  DAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26798.1 Plant self-incompatibility protein S1 family

2.7e-07

29.03

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Query:  ILFPFFTVFMSLLPPEQLYGIEYEV-----RVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKV
        +L     +F + L  E    ++ ++      VI   T N    LV+ C +K  D+G  AL+  +   +  R N   TTT  ++CT       K+FD F+V
Subjt:  ILFPFFTVFMSLLPPEQLYGIEYEV-----RVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKV

Query:  PRD---IYRCSALRKCTWLVLEDG
         RD      C   R+C W + E G
Subjt:  PRD---IYRCSALRKCTWLVLEDG

AT3G24060.1 Plant self-incompatibility protein S1 family

1.0e-38

52.48

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Query:  ILVSILMLILFPFFTVFMSLLPPEQLY-GIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFD
        I++ + MLI      +F  +L P+ ++ G E++VRVIN F +NSSLPLVIWC S   D+GGRALQE DDF W  + + W +  ++++CT+K D  RK F+
Subjt:  ILVSILMLILFPFFTVFMSLLPPEQLY-GIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFD

Query:  AFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW
        AFKV RD  RC + +KC+W V EDGFYFS DEV W KDFSW
Subjt:  AFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

Sequences

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CDS sequence

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ATGATCATGAAGATTCTCGTTAGCATTCTGATGCTCATTTTATTTCCATTCTTCACTGTTTTCATGTCATTGTTACCTCCAGAGCAACTGTATGGCATAGAATACGAAGT
CCGTGTGATCAATGGCTTCACAAACAACTCCTCACTACCTCTGGTGATATGGTGCGCGTCCAAAGACTGTGATATCGGCGGGCGTGCGCTCCAGGAGCACGATGATTTCA
GTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGATCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGAT
ATATATCGCTGTAGTGCCCTCAGGAAATGCACTTGGTTGGTTTTAGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGA

mRNA sequence

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Protein sequence

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MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRD
IYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW

Carg16516 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome