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Carg16546 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16546
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L28
Genome locationCarg_Chr14:13143307..13144480
RNA-Seq ExpressionCarg16546
SyntenyCarg16546
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-93100Show/hide
Query:  KALSSPTPESLSLSPSETKTRGFSTYRDNDNRELRSETMAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAP
        KALSSPTPESLSLSPSETKTRGFSTYRDNDNRELRSETMAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAP
Subjt:  KALSSPTPESLSLSPSETKTRGFSTYRDNDNRELRSETMAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAP

Query:  LRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        LRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  LRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]2.3e-72100Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.0e-6997.3Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPV SSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]9.5e-7197.3Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPVCSSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS+SPISAPLRPALQPVARRVCPFTGKKAN+KNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]5.0e-6490.54Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   VLGFTP  SSGVMAASS+KL F +K N ELGFL+SQL+GIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A1S3AWK5 50S ribosomal protein L28, chloroplastic3.9e-6287.33Show/hide
Query:  MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP   S+GVMA SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L283.9e-6287.33Show/hide
Query:  MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP   S+GVMA SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1CX73 50S ribosomal protein L28, chloroplastic8.7e-6287.16Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL GIKISSN+S I ++PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic1.1e-72100Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic5.1e-7097.3Show/hide
Query:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPV SSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L287.9e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic5.6e-4271.21Show/hide
Query:  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   +  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic3.8e-4674.38Show/hide
Query:  RSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK
        +SK + EL F++SQLSG+KISS H + S++P+S P +P+LQPVARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+K
Subjt:  RSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK

Query:  TIEKNGLDAVAKKAGIDLRKE
        TIEKNGLDAVAKKAGIDL K+
Subjt:  TIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic1.4e-4569.59Show/hide
Query:  VCSSGVMAASSSKLHFRS---------KAN-PELGFLSSQLSGIKISSNHSL-ISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        + +SG++ ++ S + FR          KA   ELGFL+SQLSGI+IS +    I + PISAPL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQF
Subjt:  VCSSGVMAASSSKLHFRS---------KAN-PELGFLSSQLSGIKISSNHSL-ISASPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L284.6e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family4.0e-4371.21Show/hide
Query:  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   +  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGCATTATCCAGCCCAACACCAGAAAGCTTATCCCTTTCTCCTTCAGAAACAAAAACCAGAGGGTTCTCAACTTACAGAGATAACGATAACAGAGAACTCCGCTCAGA
AACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCTGTTCTTCCGGTGTAATGGCGGCGTCGTCATCGAAACTTCACTTCAGAAGTAAAGCCAATCCCGAGCTAG
GGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCGCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCTCGT
AGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTG
GTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCTTGTCAACAAAGGCTTTGAAGACCATTGAGAAGAATGGACTCGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTC
GTAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
AAAGCATTATCCAGCCCAACACCAGAAAGCTTATCCCTTTCTCCTTCAGAAACAAAAACCAGAGGGTTCTCAACTTACAGAGATAACGATAACAGAGAACTCCGCTCAGA
AACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCTGTTCTTCCGGTGTAATGGCGGCGTCGTCATCGAAACTTCACTTCAGAAGTAAAGCCAATCCCGAGCTAG
GGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCGCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCTCGT
AGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTG
GTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCTTGTCAACAAAGGCTTTGAAGACCATTGAGAAGAATGGACTCGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTC
GTAAGGAATGATTACATAATTCATGCCTTTAATTTTACTCTTAGACTTCGAGGAAGATTTGTCTAATTGCACAACCATGTCGTATCCTGCTGGTTTTTGCCTATTCTTGT
TGTTAGTAATCTGTTCATTTATGTCAAATTATTCTTGTATCTTTGCTTTCCTCCATTTGGCAATGAAGCTGAAATCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATA
CACTTTTTTAGAAGTCCAGCCACACTGATTTTCTCTATGTGGACATGTCCCTCAGTTAAAGATTAGATCAAGAGAGTAGAGATTTGTTGATAGATAGTGTAGAGAGCTGC
AAAGCCAGGCTCTAAGAACAGGCTATCA
Protein sequenceShow/hide protein sequence
KALSSPTPESLSLSPSETKTRGFSTYRDNDNRELRSETMAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVAR
RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE