; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16559 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16559
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSplicing factor subunit
Genome locationCarg_Chr14:13081488..13085208
RNA-Seq ExpressionCarg16559
SyntenyCarg16559
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1966488.1 unnamed protein product [Brassica napus]1.8e-0665.22Show/hide
Query:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        +P    N  SE   + ASDRFNINSQLEHLQAKYVGTG ADL+R +
Subjt:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
KAG7018793.1 hypothetical protein SDJN02_20666, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-56100Show/hide
Query:  MAREASTLTLTSRYFSALLLSHLPQIEHAAVISKPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGILLYFR
        MAREASTLTLTSRYFSALLLSHLPQIEHAAVISKPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGILLYFR
Subjt:  MAREASTLTLTSRYFSALLLSHLPQIEHAAVISKPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGILLYFR

Query:  MSVAKASSTFSIFLND
        MSVAKASSTFSIFLND
Subjt:  MSVAKASSTFSIFLND
XP_031271203.1 uncharacterized protein At4g14342 isoform X1 [Pistacia vera]1.0e-0665.22Show/hide
Query:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        KP    +  S+   + ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
XP_031271204.1 uncharacterized protein At4g14342 isoform X2 [Pistacia vera]1.0e-0665.22Show/hide
Query:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        KP    +  S+   + ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  KPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
XP_042942701.1 uncharacterized protein At4g14342-like [Carya illinoinensis]1.3e-0669.05Show/hide
Query:  HCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        +C+ I  +  + ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  HCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
TrEMBL top hitse value%identityAlignment
A0A0E0QJM9 Uncharacterized protein3.1e-0970.83Show/hide
Query:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGI
        + ASDRFNINSQLEHLQAKYVGTG ADLNRLKCY+ V  L +   I +
Subjt:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGI
A0A6J1IR69 uncharacterized protein At4g14342-like1.4e-0673.17Show/hide
Query:  CNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        C  I  + N  ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  CNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
A0A7C8Z284 Uncharacterized protein1.1e-0675Show/hide
Query:  NFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        NF  +  N+ ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  NFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
A0A7C9D9Y0 Uncharacterized protein1.1e-0675Show/hide
Query:  NFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        NF  +  N+ ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  NFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
A0A7J6E7C1 Uncharacterized protein2.5e-0669.57Show/hide
Query:  NFIS------EEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        NFIS         N+ ASDRFNINSQLEHLQAKYVGTG ADLNR +
Subjt:  NFIS------EEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLK
SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143421.6e-0781.25Show/hide
Query:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        + ASDRFNINSQLEHLQAKYVGTG ADL+R +
Subjt:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
Q9LW64 Uncharacterized protein At3g233251.6e-0781.25Show/hide
Query:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        + ASDRFNINSQLEHLQAKYVGTG ADL+R +
Subjt:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 101.2e-0881.25Show/hide
Query:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        + ASDRFNINSQLEHLQAKYVGTG ADL+R +
Subjt:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 101.2e-0881.25Show/hide
Query:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK
        + ASDRFNINSQLEHLQAKYVGTG ADL+R +
Subjt:  LYASDRFNINSQLEHLQAKYVGTGRADLNRLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAGAGGCTTCAACCTTAACCTTAACCTCGCGCTATTTCTCTGCTCTTCTGCTATCGCATCTGCCCCAAATCGAACATGCAGCAGTAATTTCAAAACCTAGAAC
TCATTGCAATTTCATTTCGGAAGAGCCTAATTTATACGCCAGTGATAGATTTAACATCAATTCCCAACTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCGCGCTG
ACTTAAATAGATTAAAATGCTATTACCTTGTGGCCTTCCTCCAGAAAGGGAACACGATTGGGATTTTATTATACTTTAGAATGTCTGTGGCCAAAGCAAGCTCTACCTTC
TCCATCTTCCTTAATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCGAGAGGCTTCAACCTTAACCTTAACCTCGCGCTATTTCTCTGCTCTTCTGCTATCGCATCTGCCCCAAATCGAACATGCAGCAGTAATTTCAAAACCTAGAAC
TCATTGCAATTTCATTTCGGAAGAGCCTAATTTATACGCCAGTGATAGATTTAACATCAATTCCCAACTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCGCGCTG
ACTTAAATAGATTAAAATGCTATTACCTTGTGGCCTTCCTCCAGAAAGGGAACACGATTGGGATTTTATTATACTTTAGAATGTCTGTGGCCAAAGCAAGCTCTACCTTC
TCCATCTTCCTTAATGATTGA
Protein sequenceShow/hide protein sequence
MAREASTLTLTSRYFSALLLSHLPQIEHAAVISKPRTHCNFISEEPNLYASDRFNINSQLEHLQAKYVGTGRADLNRLKCYYLVAFLQKGNTIGILLYFRMSVAKASSTF
SIFLND