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Carg16632 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16632
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr15:8760931..8762892
RNA-Seq ExpressionCarg16632
SyntenyCarg16632
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016581.1 NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-0958.57Show/hide
Query:  PTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI-CNSPSPPLADIVLFGLSLLGFSSKILKRVY
        P   P G SVL GTPP V+P +G+V  LAH  + GSDTI CN+P PPLADI+LFGLSL     K LK V+
Subjt:  PTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI-CNSPSPPLADIVLFGLSLLGFSSKILKRVY

KAG7016605.1 putative RNA helicase SDE3 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-1349.55Show/hide
Query:  RLHTLIKNALFSS-----------LSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSL
        R HTLI   LF S            + +    T S LQSMWD    +P G SVL GTPP V+P +G    L H  VFGSDTICN P PPL DIV FGL L
Subjt:  RLHTLIKNALFSS-----------LSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSL

Query:  LGFSSKILKRV
             K LKRV
Subjt:  LGFSSKILKRV

KAG7016972.1 hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-78100Show/hide
Query:  MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALFSSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVH
        MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALFSSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVH
Subjt:  MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALFSSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVH

Query:  PTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRVY
        PTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRVY
Subjt:  PTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRVY

KAG7020717.1 WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1246.09Show/hide
Query:  FAYCGFKQTQVIKMRLHTLIKNALFSSLS----QSTPICTSS-----LLQSMWD---PPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNS
        F+   F  T+++    HTLI N  FSS +     + P+  +      L  S  D   PP   PS  ++L GTP CV+P +G VSSLAHC +  SDTIC+ 
Subjt:  FAYCGFKQTQVIKMRLHTLIKNALFSSLS----QSTPICTSS-----LLQSMWD---PPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNS

Query:  PSPPLADIVLFGLSL
        P+PPLADIVLFGLSL
Subjt:  PSPPLADIVLFGLSL

KAG7029790.1 4-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-0862.07Show/hide
Query:  TSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPL
        T SLLQS+WDPP H  SG S+LAGTP  VHP QG  S LA+  +FG D I N PSPP+
Subjt:  TSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPL

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTACAAGCATCGCCCACTGGTTTTTGTCTCGCTCATCAATGGCAGCCCTGCTGTTTTCACTGTTCTTGTACGAGCAATGGGTCCATCTCTGTTCCCTTCATTTGC
TTATTGCGGATTCAAGCAGACCCAGGTTATTAAAATGCGTCTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCTCTCACAATCCACCCCTATTTGCACTAGTTCCC
TTCTCCAATCAATGTGGGACCCCCCAACCCACTCCCCTTCGGGGCCCAGCGTTCTTGCTGGCACACCGCCTTGTGTCCACCCCACTCAGGGCTCAGTCTCCTCGCTAGCA
CATTGCCATGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGATTTTGAA
ACGCGTATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTACAAGCATCGCCCACTGGTTTTTGTCTCGCTCATCAATGGCAGCCCTGCTGTTTTCACTGTTCTTGTACGAGCAATGGGTCCATCTCTGTTCCCTTCATTTGC
TTATTGCGGATTCAAGCAGACCCAGGTTATTAAAATGCGTCTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCTCTCACAATCCACCCCTATTTGCACTAGTTCCC
TTCTCCAATCAATGTGGGACCCCCCAACCCACTCCCCTTCGGGGCCCAGCGTTCTTGCTGGCACACCGCCTTGTGTCCACCCCACTCAGGGCTCAGTCTCCTCGCTAGCA
CATTGCCATGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGATTTTGAA
ACGCGTATACTAG
Protein sequenceShow/hide protein sequence
MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALFSSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLA
HCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRVY