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Carg16707 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16707
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLysM domain-containing protein
Genome locationCarg_Chr16:776192..776566
RNA-Seq ExpressionCarg16707
SyntenyCarg16707
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]1.5e-64100Show/hide
Query:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
        MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
Subjt:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD

Query:  DVFPGLVIKIISSHNPPKLGFQTG
        DVFPGLVIKIISSHNPPKLGFQTG
Subjt:  DVFPGLVIKIISSHNPPKLGFQTG

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]2.9e-3981.31Show/hide
Query:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
        SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
Subjt:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL

Query:  VIKIISS
        VIKII+S
Subjt:  VIKIISS

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]2.9e-3983.81Show/hide
Query:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-
        SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII 
Subjt:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-

Query:  -SSHN
         S+HN
Subjt:  -SSHN

XP_022157015.1 uncharacterized protein LOC111023841 [Momordica charantia]4.7e-4275Show/hide
Query:  RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLV
        R+G PSSR   DVVSWYCA+ +L LILIGSIRE++ S+ +ADD G++ RGNL+ GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLV

Query:  IKIISSHNPPKLGFQT
        IKIISS NP   G +T
Subjt:  IKIISSHNPPKLGFQT

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]1.7e-6095.97Show/hide
Query:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
        MPLLYTSRT PPSSRLLIDVVSWYCA+A+LGLILIGSIRET SSSASADDG QMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
Subjt:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD

Query:  DVFPGLVIKIISSHNPPKLGFQTG
        DVFPGLVIKIISSHNPPKLGFQTG
Subjt:  DVFPGLVIKIISSHNPPKLGFQTG

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein1.4e-3981.31Show/hide
Query:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
        SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
Subjt:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL

Query:  VIKIISS
        VIKII+S
Subjt:  VIKIISS

A0A1S3AXP2 uncharacterized protein LOC1034840361.4e-3983.81Show/hide
Query:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-
        SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII 
Subjt:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-

Query:  -SSHN
         S+HN
Subjt:  -SSHN

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein1.4e-3983.81Show/hide
Query:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-
        SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII 
Subjt:  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII-

Query:  -SSHN
         S+HN
Subjt:  -SSHN

A0A6J1DRZ3 uncharacterized protein LOC1110238412.3e-4275Show/hide
Query:  RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLV
        R+G PSSR   DVVSWYCA+ +L LILIGSIRE++ S+ +ADD G++ RGNL+ GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLV

Query:  IKIISSHNPPKLGFQT
        IKIISS NP   G +T
Subjt:  IKIISSHNPPKLGFQT

A0A6J1J769 uncharacterized protein LOC1114831848.3e-6195.97Show/hide
Query:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
        MPLLYTSRT PPSSRLLIDVVSWYCA+A+LGLILIGSIRET SSSASADDG QMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD
Subjt:  MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPD

Query:  DVFPGLVIKIISSHNPPKLGFQTG
        DVFPGLVIKIISSHNPPKLGFQTG
Subjt:  DVFPGLVIKIISSHNPPKLGFQTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.2e-2249.53Show/hide
Query:  GPPSSRLLIDVVSWYCALALLGLILIGSI---RETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
        G  SS  + + +SWYCA+    ++L+ S    +E S+          M+ G      ACDEIY V EGETL TIS+KCGDPYIVE NPHIHD DD+FPGL
Subjt:  GPPSSRLLIDVVSWYCALALLGLILIGSI---RETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL

Query:  VIKIISS
        +I+I  S
Subjt:  VIKIISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein5.6e-2554.74Show/hide
Query:  DVVSWYCALALLGLILIGSIRETSSSSASADDGG---QMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI
        + V+ YC +ALL L L GS++ ++   +     G   ++ RG  +  R C+E+YVVGEG+TLH+IS+KCGDP+IVERNPHIHDPDDVFPGL+IK+
Subjt:  DVVSWYCALALLGLILIGSIRETSSSSASADDGG---QMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein1.6e-2756.73Show/hide
Query:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL
        SRTG        D+ +W  A+ LL LIL+ S+RE ++S++        +RG+  + + C+EIY+VGEGETLHTI DKCGDP+IVERNPHIHDPDDVFPGL
Subjt:  SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGL

Query:  VIKI
        V+KI
Subjt:  VIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTC
TATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAG
GAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATC
ATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTC
TATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAG
GAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATC
ATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA
Protein sequenceShow/hide protein sequence
MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI
ISSHNPPKLGFQTG