; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16711 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16711
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMADS-box transcription factor 6-like
Genome locationCarg_Chr16:792559..794217
RNA-Seq ExpressionCarg16711
SyntenyCarg16711
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR002487 - Transcription factor, K-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576757.1 MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4277.37Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE------------------------------NLVGEELEA
        MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST+                              NLVGEELEA
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE------------------------------NLVGEELEA

Query:  LSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK
        LSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK
Subjt:  LSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK

KAG7014799.1 MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-48100Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQ
        MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQ
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQ

Query:  KIAYLIKV
        KIAYLIKV
Subjt:  KIAYLIKV

XP_008439145.1 PREDICTED: MADS-box transcription factor 17-like [Cucumis melo]4.6e-3359.74Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------
        MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST+                                       
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------

Query:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV
               N +GEELE LSLKELH LEKQLDKTLSQ R RK EIMLQK+A L K+
Subjt:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV

XP_022922550.1 MADS-box transcription factor 6-like [Cucurbita moschata]5.7e-3664.86Show/hide
Query:  GRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE----------------------------------------
        G+GKVVVERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALI+FSSRGKLFEFGST+                                        
Subjt:  GRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE----------------------------------------

Query:  ------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIA
              NLVGEELEALS+KELHTLEKQLDKTLSQTRHRKVEIMLQKIA
Subjt:  ------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIA

XP_038886448.1 agamous-like MADS-box protein MADS3 [Benincasa hispida]7.8e-3359.74Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------
        MGRGKVV+ERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALIIFSSRGKLFEFGST+                                       
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------

Query:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV
               N +GEELE L+LKELH LEKQLDKTLS TR RK EIMLQK+A L K+
Subjt:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV

TrEMBL top hitse value%identityAlignment
A0A1S3AY43 MADS-box transcription factor 17-like2.2e-3359.74Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------
        MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST+                                       
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------

Query:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV
               N +GEELE LSLKELH LEKQLDKTLSQ R RK EIMLQK+A L K+
Subjt:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV

A0A4D9AYR9 MADS-box transcription factor, plant3.5e-3169.52Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQ
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGST +L+GE+L  LS+KEL  LEKQL+  L+QTRHRK +I+++
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQ

Query:  KIAYL
        ++  L
Subjt:  KIAYL

A0A5D3DF02 MADS-box transcription factor 17-like1.5e-2959.29Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------
        MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST+                                       
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------

Query:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRK
               N +GEELE LSLKELH LEKQLDKTLSQ R RK
Subjt:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRK

A0A6J1CJS1 MADS-box transcription factor 6-like2.1e-3157.79Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------
        MGRGKVV+ERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALIIF SRGKLFEF ST+                                       
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE---------------------------------------

Query:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV
               N +GEELE L+LKELH LEKQLDKTLSQ R RK EIMLQ++A L K+
Subjt:  -------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV

A0A6J1E935 MADS-box transcription factor 6-like2.8e-3664.86Show/hide
Query:  GRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE----------------------------------------
        G+GKVVVERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALI+FSSRGKLFEFGST+                                        
Subjt:  GRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE----------------------------------------

Query:  ------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIA
              NLVGEELEALS+KELHTLEKQLDKTLSQTRHRKVEIMLQKIA
Subjt:  ------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIA

SwissProt top hitse value%identityAlignment
P29386 Agamous-like MADS-box protein AGL61.4e-2444.81Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS-----------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS-----------------------------------------

Query:  ------TENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK
                NL+GE+L  + +KEL  LE+QL+  L+ TR RK ++M++++  L K
Subjt:  ------TENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK

Q38837 Agamous-like MADS-box protein AGL132.6e-2343.71Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRGKV V+RIENK+ RQV+FSKR++GLLKKA ELSVLCD +V+LIIFS+ GKL+EF +                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL
               NLVGE+LE +S+KEL TLE+QL+  LS TR +K ++M++++  L
Subjt:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL

Q6EU39 MADS-box transcription factor 62.8e-2546.71Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  -------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL
                +L+GE+L  LS+KEL  LEKQL+  LSQ R RK ++M++++  L
Subjt:  -------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL

Q7XUN2 MADS-box transcription factor 172.8e-2546.36Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  ---------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI
                  +++GE+L  LS+KEL  LEKQL+ +LSQ R RK +IM++++
Subjt:  ---------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI

Q8LLR1 Agamous-like MADS-box protein MADS38.1e-2546.62Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI
               +L+GE+L  LS+KEL  LEKQL+  L+Q R RK ++M++++
Subjt:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein4.6e-2343.14Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRG+V ++RIENK+NRQV+F+KRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EF S+                                        
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  -----------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI
                    NL+GE+L  LS KEL +LE+QLD +L Q R  + + ML ++
Subjt:  -----------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKI

AT2G45650.1 AGAMOUS-like 69.8e-2644.81Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS-----------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS-----------------------------------------

Query:  ------TENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK
                NL+GE+L  + +KEL  LE+QL+  L+ TR RK ++M++++  L K
Subjt:  ------TENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK

AT3G61120.1 AGAMOUS-like 131.8e-2443.71Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------
        MGRGKV V+RIENK+ RQV+FSKR++GLLKKA ELSVLCD +V+LIIFS+ GKL+EF +                                         
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST----------------------------------------

Query:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL
               NLVGE+LE +S+KEL TLE+QL+  LS TR +K ++M++++  L
Subjt:  ------ENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL

AT5G15800.1 K-box region and MADS-box transcription factor family protein4.6e-2344.81Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEF------------------GSTE---------------------
        MGRG+V ++RIENK+NRQV+F+KRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EF                  GS E                     
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEF------------------GSTE---------------------

Query:  ----------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL
                  NL+GE+L  L+ KEL  LE+QLD +L Q R  K + ML +++ L
Subjt:  ----------NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYL

AT5G60910.1 AGAMOUS-like 83.5e-2341.67Show/hide
Query:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFG------------------------------------------
        MGRG+V ++RIENK+NRQV+FSKRR+GLLKKA E+SVLCD +VALI+FSS+GKLFE+                                           
Subjt:  MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFG------------------------------------------

Query:  -------STENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK
               +  N +GE+L++LSLKEL +LE QLD  +   R RK + M + I+ L K
Subjt:  -------STENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGGGGAAAGTGGTGGTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGAGCTTCTCAAAGCGGAGAAATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGT
GCTCTGCGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACCGAGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAA
AAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACAAACCAGACACCGGAAGGTTGAGATAATGCTTCAAAAAATAGCATACTTGATAAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGGGGAAAGTGGTGGTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGAGCTTCTCAAAGCGGAGAAATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGT
GCTCTGCGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACCGAGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAA
AAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACAAACCAGACACCGGAAGGTTGAGATAATGCTTCAAAAAATAGCATACTTGATAAAAGTGTGATAA
ACATGTAATGTGTAGCCTTTTGTGCATTGATAAAAGG
Protein sequenceShow/hide protein sequence
MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV