; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16775 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16775
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L13
Genome locationCarg_Chr16:1155827..1157396
RNA-Seq ExpressionCarg16775
SyntenyCarg16775
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001380 - Ribosomal protein L13e
IPR018256 - Ribosomal protein L13e, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014861.1 hypothetical protein SDJN02_22491, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-62100Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAKSI
Subjt:  RNRSLESLQANVQRLKTYKAKSI

XP_008453835.1 PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo]1.2e-6197.56Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

XP_022941800.1 60S ribosomal protein L13-1-like [Cucurbita moschata]9.1e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

XP_022984589.1 60S ribosomal protein L13-1 [Cucurbita maxima]9.1e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

XP_022990054.1 60S ribosomal protein L13-1-like [Cucurbita maxima]9.1e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

TrEMBL top hitse value%identityAlignment
A0A1S3BWP2 60S ribosomal protein L135.7e-6297.56Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

A0A5A7TNJ5 60S ribosomal protein L135.7e-6297.56Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

A0A6J1FUT5 60S ribosomal protein L134.4e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

A0A6J1J2K7 60S ribosomal protein L134.4e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

A0A6J1JSD3 60S ribosomal protein L134.4e-6298.37Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        RNRSLESLQANVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

SwissProt top hitse value%identityAlignment
P41127 60S ribosomal protein L13-11.1e-5786.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ NVQRLKTYK K +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

P41128 60S ribosomal protein L13-12.8e-5886.99Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQTLKYNMKVR G+GF+LEELK+AGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ+NVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

P41129 60S ribosomal protein L13-26.3e-5886.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI++DHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ+NVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

Q9FF90 60S ribosomal protein L13-36.3e-5886.99Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGI+VDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ+NVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

Q9SMT4 Putative 60S ribosomal protein L13-24.0e-5280.49Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH QTL YNMKVRAG+GF+LEELKAAGIPKKLAPTIGI+VDH R
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE  Q NVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

Arabidopsis top hitse value%identityAlignment
AT3G49010.1 breast basic conserved 17.7e-5986.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ NVQRLKTYK K +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

AT3G49010.2 breast basic conserved 17.7e-5986.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ NVQRLKTYK K +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

AT3G49010.3 breast basic conserved 17.7e-5986.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ NVQRLKTYK K +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

AT3G49010.4 breast basic conserved 17.7e-5986.18Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIAVDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ NVQRLKTYK K +
Subjt:  RNRSLESLQANVQRLKTYKAKSI

AT5G23900.1 Ribosomal protein L13e family protein4.5e-5986.99Show/hide
Query:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR
        MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGI+VDHRR
Subjt:  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRR

Query:  RNRSLESLQANVQRLKTYKAKSI
        +NRSLE LQ+NVQRLKTYKAK +
Subjt:  RNRSLESLQANVQRLKTYKAKSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCACAACAATGTTATCCCTAGCGGTCACTTTAGGAAGCACTGGCAAAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACCAGAAGAAGAAATGCTCG
TCAAGAGAAAGCTGTGAAGAACTTCCCCCGGCCAACTGCTGGACCACTCCGTCCCATTGTTCACGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGGAGGGGCT
TCTCTCTTGAGGAATTGAAGGCTGCTGGTATTCCCAAGAAACTAGCACCAACAATTGGAATAGCAGTTGACCATCGTCGTAGGAATCGCTCTCTCGAAAGTCTACAGGCT
AACGTGCAGAGGCTGAAGACATACAAGGCCAAGAGTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCACAACAATGTTATCCCTAGCGGTCACTTTAGGAAGCACTGGCAAAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACCAGAAGAAGAAATGCTCG
TCAAGAGAAAGCTGTGAAGAACTTCCCCCGGCCAACTGCTGGACCACTCCGTCCCATTGTTCACGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGGAGGGGCT
TCTCTCTTGAGGAATTGAAGGCTGCTGGTATTCCCAAGAAACTAGCACCAACAATTGGAATAGCAGTTGACCATCGTCGTAGGAATCGCTCTCTCGAAAGTCTACAGGCT
AACGTGCAGAGGCTGAAGACATACAAGGCCAAGAGTATTTGA
Protein sequenceShow/hide protein sequence
MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQA
NVQRLKTYKAKSI