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Carg16806 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16806
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal protein S12
Genome locationCarg_Chr16:1308258..1309707
RNA-Seq ExpressionCarg16806
SyntenyCarg16806
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAB88456.1 ribosomal protein S12 [Lupinus luteus]1.6e-0476.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

KAF1855339.1 hypothetical protein Lal_00015650 [Lupinus albus]1.6e-0476.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

KAG2611575.1 hypothetical protein PVAP13_4KG104120 [Panicum virgatum]1.2e-0781.4Show/hide
Query:  ENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVR
        +N A+TVLEL+IN+PRSKEYA VF+REHRKKPNSA RKIAKVR
Subjt:  ENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVR

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]1.6e-0476.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

XP_042751547.1 ribosomal protein S12, mitochondrial-like [Lactuca sativa]5.4e-0573.81Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR C+ TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

TrEMBL top hitse value%identityAlignment
A0A385G2D2 Ribosomal protein S127.6e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

A0A6A4P1M9 Putative ribosomal protein S12/S237.6e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

A0A6A5L832 Uncharacterized protein7.6e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

O47435 Ribosomal protein S127.6e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Q7J5Z4 Ribosomal protein S127.6e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial1.7e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

P28520 Ribosomal protein S12, mitochondrial1.5e-0567.39Show/hide
Query:  KRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHR
        K+ TD TRAS+Q  QKQGV LR+STRT KKPNS L KI KVR  +R
Subjt:  KRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHR

P60096 Ribosomal protein S12, mitochondrial1.7e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

P60097 Ribosomal protein S12, mitochondrial1.7e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Q95869 Ribosomal protein S12, mitochondrial1.9e-0569.05Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A +QCPQKQ V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein2.0e-0564.29Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

ATMG00980.1 Ribosomal protein S12/S23 family protein2.0e-0564.29Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACT
CGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAAC
GGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATA
GCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTC
AACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCAAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACAC
GAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGA
GAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGA
AAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCCCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTA
AGATAGCCAAAGTACGAAAACGGCACACGGACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTG
AGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATG
GCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAG
ACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACT
CGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAAC
GGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATA
GCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTC
AACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCAAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACAC
GAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGA
GAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGA
AAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCCCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTA
AGATAGCCAAAGTACGAAAACGGCACACGGACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTG
AGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATG
GCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAG
ACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAG
Protein sequenceShow/hide protein sequence
MVEKKNGVRTILELQINVSKSKEYACPKYENGAQTVLELWINIPRSQEYICVFQREHLKKPNSNPRKIAKVRKRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKI
AKVRKRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHRDCTQASDQYPKKQGVCARPSTRTRKNLIQLNPKYENGARTVLELQINISRSKKYARVFQR
EHRKKPNSAPRKIAKVRKRCTDRTRALDQCPLKQRYENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVRKRHTDRTRASDQCPLKQGIAKVRKRRTKSYL
SFRSISLEARSTLVSFNENTEKKPNLALRKIDKVQKWRTDCTRALDQYPHKHGVHSRLSMRTLKKPNSTLCKIDKVRKWRTDCTRASDQYP