CuGenDBv2

Gene ID	Carg16841
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Genome location	Carg_Chr19:224230..227098
RNA-Seq Expression	Carg16841
Synteny	Carg16841
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571471.1 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-211

95.29

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFA+QL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

KAG7011233.1 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-215

100

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVSSAGIYKPTDEPPHVEGDTVKADAGHVGVEQ
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVSSAGIYKPTDEPPHVEGDTVKADAGHVGVEQ
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVSSAGIYKPTDEPPHVEGDTVKADAGHVGVEQ

Query:  YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGR
        YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGR
Subjt:  YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGR

Query:  PVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA
        PVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA
Subjt:  PVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

3.7e-210

95.04

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISS SALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

XP_022967430.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima]

8.2e-210

94.54

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSS+SPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAHANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

XP_023554314.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita pepo subsp. pepo]

9.0e-209

94.54

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWG PAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEA ANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE82 Epimerase domain-containing protein

3.0e-181

82.93

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-----FLPFPSSS--RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIG
        MAAL   SSSLF+SKPSI+ PSS+SP     SLSPIS+ S ++SSF+ISHS     +  F SSS  R S V SFSVRASS+ KK VLIVNTNSGGHAVIG
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-----FLPFPSSS--RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIY
        FYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKDID+V                  SSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIY

Query:  KPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHAN
        K TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+N
Subjt:  KPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHAN

Query:  IFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNI
        IFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDD I
Subjt:  IFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNI

Query:  LESLKVPVAA
        LESL VPVAA
Subjt:  LESLKVPVAA

A0A1S3BLW3 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.4e-183

83.58

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-FLPFPSSS----RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFY
        MAAL   SSSLF+SKPSI+ PS +SP     SLSPIS+ S ++SSF+ISHS FL   SSS    R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFY
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-FLPFPSSS----RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFY

Query:  FAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKP
        FAK+LLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKDID+V                  SSAGIYKP
Subjt:  FAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKP

Query:  TDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIF
        TDEPPHVEGD VKADAGHVGVE+Y+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIF
Subjt:  TDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIF

Query:  NCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILE
        NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKS+TNLPEDLKERFEEYVKIGRDKKAIKFELDD ILE
Subjt:  NCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

1.4e-183

83.58

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-FLPFPSSS----RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFY
        MAAL   SSSLF+SKPSI+ PS +SP     SLSPIS+ S ++SSF+ISHS FL   SSS    R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFY
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-FLPFPSSS----RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFY

Query:  FAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKP
        FAK+LLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKDID+V                  SSAGIYKP
Subjt:  FAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKP

Query:  TDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIF
        TDEPPHVEGD VKADAGHVGVE+Y+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIF
Subjt:  TDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIF

Query:  NCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILE
        NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKS+TNLPEDLKERFEEYVKIGRDKKAIKFELDD ILE
Subjt:  NCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.8e-210

95.04

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISS SALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

4.0e-210

94.54

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
        MAALASSSSSLFTSKPSIHLPSSLSPCLLRSS+SPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL
Subjt:  MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQL

Query:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP
        LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV                  SSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPTDEPP

Query:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD
        HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAHANIFNCVSD
Subjt:  HVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP
        RAVTLDGMAKLCAQAAGRPVNIVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.1e-153

72.24

Show/hide

Query:  MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-SSSRRSNVCSFSVRASS-ADKKNVLIVNTNSGGHAVIGFYF
        MAAL SSSS  F+SK +  + + L  P L R SL S  SS S+L+SS + S S L F   +SRR +   F+V+ASS  +KKNVLIVNTNSGGHAVIGFYF
Subjt:  MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-SSSRRSNVCSFSVRASS-ADKKNVLIVNTNSGGHAVIGFYF

Query:  AKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPT
        AK+LL +GH VTILTVG+ESS+KMKKPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD+D+V                  SSAGIYK T
Subjt:  AKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPT

Query:  DEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFN
        ++PPHVEGD VKADAGHV VE+Y+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNISHVRDLSSMLT AV  P+ A  NIFN
Subjt:  DEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFN

Query:  CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILES
        CVSDRAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++LGW+S TNLPEDLKERFEEYVKIGRDKK IKFELDD ILE+
Subjt:  CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILES

Query:  LKVPVAA
        LK PVAA
Subjt:  LKVPVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

1.9e-44

35.15

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Query:  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI
        S++ +K +LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     +      K +   GD  +   V   ++   FDVV D NG++ 
Subjt:  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI

Query:  DSV----------------SSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM
        + V                SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG+
Subjt:  DSV----------------SSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM

Query:  QLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L
Subjt:  QLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNL

Query:  PEDLKERFEEYVKIGRDKKAIKFELDDNIL
         E L + +      G  +K   F  DD IL
Subjt:  PEDLKERFEEYVKIGRDKKAIKFELDDNIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

1.4e-45

35.15

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Query:  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI
        S++ +K +LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     +      K +   GD  +   V   ++   FDVV D NG++ 
Subjt:  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI

Query:  DSV----------------SSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM
        + V                SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG+
Subjt:  DSV----------------SSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM

Query:  QLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L
Subjt:  QLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNL

Query:  PEDLKERFEEYVKIGRDKKAIKFELDDNIL
         E L + +      G  +K   F  DD IL
Subjt:  PEDLKERFEEYVKIGRDKKAIKFELDDNIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

8.0e-155

72.24

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Query:  MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-SSSRRSNVCSFSVRASS-ADKKNVLIVNTNSGGHAVIGFYF
        MAAL SSSS  F+SK +  + + L  P L R SL S  SS S+L+SS + S S L F   +SRR +   F+V+ASS  +KKNVLIVNTNSGGHAVIGFYF
Subjt:  MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-SSSRRSNVCSFSVRASS-ADKKNVLIVNTNSGGHAVIGFYF

Query:  AKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPT
        AK+LL +GH VTILTVG+ESS+KMKKPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD+D+V                  SSAGIYK T
Subjt:  AKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV------------------SSAGIYKPT

Query:  DEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFN
        ++PPHVEGD VKADAGHV VE+Y+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNISHVRDLSSMLT AV  P+ A  NIFN
Subjt:  DEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFN

Query:  CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILES
        CVSDRAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++LGW+S TNLPEDLKERFEEYVKIGRDKK IKFELDD ILE+
Subjt:  CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILES

Query:  LKVPVAA
        LK PVAA
Subjt:  LKVPVAA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTCTCCCCAATCTC
TTCCCCTTCTGCTCTCACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTG
CTGACAAGAAGAACGTCTTGATTGTCAACACAAACAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTG
ACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGGATCCTGCCGAAGTTGG
GAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATG
TTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCACAGTACATGATTGGATCT
GGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTCCGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCTCACATGTCAGGGA
CTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACATGCTAACATATTCAACTGCGTGAGCGATCGCGCCGTGACTCTTGATGGAATGGCCAAGCTAT
GTGCTCAAGCAGCAGGACGTCCAGTTAACATCGTCCATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAG
CCCAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTAT
TAAGTTTGAGTTAGATGATAATATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGA

mRNA sequence

Show/hide mRNA sequence

TAGTATCGGTAAGTATCATTAAAAGCGATAATATCGTTGAAGTAGTTCGGAATTTGGTCTGTATCCACTTTCCAATTTGACCATTTAATTTTTAAAGTTTACATTAGCGA
AGTGGTATAATGGGCATGGCAAAATGATTGGCCGTTATCATACATCATCTATCTGATAGCTAAAAGAGCTGATTCTCATCTTCACACGGTCCAGCTCAAAATTCTTCGAT
TCCATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTCTCCCCAAT
CTCTTCCCCTTCTGCTCTCACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCT
CTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAACAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATT
TTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGGATCCTGCCGAAGT
TGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCC
ATGTTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCACAGTACATGATTGGA
TCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTCCGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCTCACATGTCAG
GGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACATGCTAACATATTCAACTGCGTGAGCGATCGCGCCGTGACTCTTGATGGAATGGCCAAGC
TATGTGCTCAAGCAGCAGGACGTCCAGTTAACATCGTCCATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCG
GAGCCCAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGC
TATTAAGTTTGAGTTAGATGATAATATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGACCGTTCTTCGAATAATCGTGCACAACGGTACTGTCCATCTTACAGTACA
TCTACATGTATTCTCATTTATTGTACTTCTATCAACTTAACCAAATAACGTGAGATTCAGAAGTGAAGTAATTGAGCTTTCACTTCTGTTGCCCCATTTCTGAACAAAGA
GCACTCTAGTTCTGATTCATTCCTAGTGAAAATATATCCATTTTTTTGCCAGAATTATAAAAAGCCAAGACAATGTACAATGTGCAAAAACTTAGGACCAGCCTGATAAA
GATATTTGAAGTAAAGTATTATGAATTTCATTAGGGATACAAATGTCAGTTAACCAAAAAGATCGTTTTAATTACACGAGT

Protein sequence

Show/hide protein sequence

MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTIL
TVGEESSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVSSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS
GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAE
PRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA

Carg16841 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome