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Carg16885 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16885
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleolar protein 10
Genome locationCarg_Chr19:665900..670011
RNA-Seq ExpressionCarg16885
SyntenyCarg16885
Gene Ontology termsGO:0010197 - polar nucleus fusion (biological process)
GO:0031118 - rRNA pseudouridine synthesis (biological process)
GO:0031120 - snRNA pseudouridine synthesis (biological process)
GO:0015030 - Cajal body (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031429 - box H/ACA snoRNP complex (cellular component)
GO:0090661 - box H/ACA telomerase RNP complex (cellular component)
GO:0034513 - box H/ACA snoRNA binding (molecular function)
GO:0070034 - telomerase RNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4913253.1 hypothetical protein JHK86_053686 [Glycine max]2.3e-2592.06Show/hide
Query:  TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        TMYL +YINDNGDKVYTTKK+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2894.03Show/hide
Query:  ECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        ECLATMYL +YINDNGDKVYTTKKESPLGLV QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPP
Subjt:  ECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

KAG7011275.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-32100Show/hide
Query:  MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

RWR83981.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f. kanehirae]1.3e-2590.62Show/hide
Query:  ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        A MYL YYIN+NGDKVYTTKKESPLG+  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

XP_022963952.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata]2.4e-27100Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

TrEMBL top hitse value%identityAlignment
A0A1S3BHD2 Nucleolar protein 101.1e-2593.55Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MYL +YINDNGDKVYTTKKESPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

A0A443NZR2 Nucleolar protein 106.4e-2690.62Show/hide
Query:  ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        A MYL YYIN+NGDKVYTTKKESPLG+  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

A0A6J1HGJ4 Nucleolar protein 101.2e-27100Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

A0A6J1HVE0 Nucleolar protein 101.2e-27100Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

K7MYQ3 Nucleolar protein 101.1e-2592.06Show/hide
Query:  TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        TMYL +YINDNGDKVYTTKK+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

SwissProt top hitse value%identityAlignment
Q6DRH5 H/ACA ribonucleoprotein complex subunit 34.8e-1866.13Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+L +Y+N+NG++VYT KK  P G    SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein3.8e-2381.97Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        MYL  YIN+ G+KVYTTKKESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

Q9CQS2 H/ACA ribonucleoprotein complex subunit 31.8e-1764.52Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+L YY+N+ GD+VYT KK  P+G    SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 31.8e-1764.52Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+L YY+N+ GD+VYT KK  P+G    SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9V5P6 H/ACA ribonucleoprotein complex subunit 34.8e-1869.35Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        MYLMY IN+NGD+VYT KK +  G    SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein2.7e-2481.97Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        MYL  YIN+ G+KVYTTKKESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

AT2G20490.2 nucleolar RNA-binding Nop10p family protein2.5e-2280.33Show/hide
Query:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        MYL  YIN+ G+KVYTT KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTGAGTGTTTAGCAACTATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACGAAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATC
TGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTGAGTGTTTAGCAACTATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACGAAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATC
TGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCG
Protein sequenceShow/hide protein sequence
MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP