CuGenDBv2

Gene ID	Carg16916
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	Carg_Chr19:891963..896418
RNA-Seq Expression	Carg16916
Synteny	Carg16916
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571565.1 Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.5e-173

90.65

Show/hide

Query:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF
        MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYL+Y  R+LASVTCSASDKPEI                   
Subjt:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF

Query:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
         SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Subjt:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL

Query:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
        RVDQNKVITISTLRGIARLV+CAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
Subjt:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK

Query:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDG
        LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGL   L   + G
Subjt:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDG

KAG7011306.1 Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.3e-233

100

Show/hide

Query:  KKINFFSFIQPSSSELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRN
        KKINFFSFIQPSSSELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRN
Subjt:  KKINFFSFIQPSSSELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRN

Query:  RVSFNFGPSVADSLRYLKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALA
        RVSFNFGPSVADSLRYLKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALA
Subjt:  RVSFNFGPSVADSLRYLKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALA

Query:  NSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLER
        NSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLER
Subjt:  NSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLER

Query:  GVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG
        GVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG
Subjt:  GVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG

Query:  LLDGMDGRVL
        LLDGMDGRVL
Subjt:  LLDGMDGRVL

XP_022963501.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

4.5e-206

93.47

Show/hide

Query:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL
        +LYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRN VSFNFGPSVADSL
Subjt:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL

Query:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
        RYL+Y  R+LASVTCSASDKPEI                    SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
Subjt:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL

Query:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
        NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
Subjt:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS

Query:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022967293.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

3.0e-178

91.85

Show/hide

Query:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF
        MVVSMAIIPSCNNFGRPPHCSRTRSHNA NLKFCRRICCHVHRN VSFNFGPSVADSLRYL+Y  R+LASVTCSASDKPEI                   
Subjt:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF

Query:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
         SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALAN+SRAEEVPDILNGLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Subjt:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL

Query:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
        RVDQNKVITISTLRGIARLVICAGPES IMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
Subjt:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK

Query:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

5.8e-206

93.22

Show/hide

Query:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL
        +LYGAANSGYRGAIETFLRNLLPLIIWETTLYINC+YLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL
Subjt:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL

Query:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
        RYL+Y  R+LASVTCSASDKPEI                    SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
Subjt:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL

Query:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
        NGLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
Subjt:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS

Query:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

1.6e-148

78.53

Show/hide

Query:  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLS
        +S  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  Y  R+LA+   SA+DKPEI                    S
Subjt:  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLS

Query:  STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
        STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Subjt:  STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV

Query:  DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA
        DQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLA
Subjt:  DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA

Query:  GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

1.6e-148

78.53

Show/hide

Query:  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLS
        +S  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  Y  R+LA+   SA+DKPEI                    S
Subjt:  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLS

Query:  STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
        STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Subjt:  STAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV

Query:  DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA
        DQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLA
Subjt:  DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA

Query:  GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1BP58 protein LOW PSII ACCUMULATION 1, chloroplastic

4.7e-153

80.06

Show/hide

Query:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLK--YRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF
        MVVSMA I S NN G PPH  RTRSHNA N KF R ICC VH   V F+ GPS+A+SLR L+   R+LA+ TCSA++KPEI                   
Subjt:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLK--YRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF

Query:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
         SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAE+VPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Subjt:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL

Query:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
        RVDQ+KVI + +LRGIARLVICAGPESFIMEAF++SEPFTE+LLERGV+V+PFATD SSLNFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKK
Subjt:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK

Query:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        LAGVS++SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

2.2e-206

93.47

Show/hide

Query:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL
        +LYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRN VSFNFGPSVADSL
Subjt:  ELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL

Query:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
        RYL+Y  R+LASVTCSASDKPEI                    SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL
Subjt:  RYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL

Query:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
        NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS
Subjt:  NGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS

Query:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HWD0 protein LOW PSII ACCUMULATION 1, chloroplastic

1.5e-178

91.85

Show/hide

Query:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF
        MVVSMAIIPSCNNFGRPPHCSRTRSHNA NLKFCRRICCHVHRN VSFNFGPSVADSLRYL+Y  R+LASVTCSASDKPEI                   
Subjt:  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFF

Query:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
         SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALAN+SRAEEVPDILNGLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Subjt:  LSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL

Query:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
        RVDQNKVITISTLRGIARLVICAGPES IMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK
Subjt:  RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKK

Query:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  LAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

8.9e-32

28.65

Show/hide

Query:  FCRRICCHVHRNRVSFNFGPSVADSLRY------LKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA
        +  + CCH +R       G    D LR       LK+  + +    AS +       +Q E RL             K+ SEV +PFR VR FFY  F A
Subjt:  FCRRICCHVHRNRVSFNFGPSVADSLRY------LKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA

Query:  SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESF
        +  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  
Subjt:  SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESF

Query:  IMEAFKTSEPFTERLLERGVLVIPF---------------------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLAGVS
        +  A + ++ F   LL RGVL++P                      AT   S+  +FD R +     +K K    ++   V   +W  W+ DQ+   GV+
Subjt:  IMEAFKTSEPFTERLLERGVLVIPF---------------------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLAGVS

Query:  SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
            VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

6.3e-33

28.65

Show/hide

Query:  FCRRICCHVHRNRVSFNFGPSVADSLRY------LKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA
        +  + CCH +R       G    D LR       LK+  + +    AS +       +Q E RL             K+ SEV +PFR VR FFY  F A
Subjt:  FCRRICCHVHRNRVSFNFGPSVADSLRY------LKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA

Query:  SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESF
        +  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  
Subjt:  SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESF

Query:  IMEAFKTSEPFTERLLERGVLVIPF---------------------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLAGVS
        +  A + ++ F   LL RGVL++P                      AT   S+  +FD R +     +K K    ++   V   +W  W+ DQ+   GV+
Subjt:  IMEAFKTSEPFTERLLERGVLVIPF---------------------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLAGVS

Query:  SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
            VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.3e-99

54.83

Show/hide

Query:  MAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKYRDLA-SVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTA
        MA + S   +    H S+   + A+     RRI  H HR R+ F+         R  K + L+ +  C A+D+P                     +S+ A
Subjt:  MAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKYRDLA-SVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTA

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-
        +IRSEVLSPFRSVRMFFYL FIASG+LGGLIAT++L+ ALAN +R+ EV +I+ GLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ 
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-

Query:  NKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDERE-EMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAG
        NKVI++  LRG+ARLVICAGP  FI EAFK S+ +T+ L+ERGV+V+ +ATD +S   EFDE +   ++++ +RK+LWR+TPV++ +W  WL++QKKLA 
Subjt:  NKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDERE-EMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAG

Query:  VSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV
        VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Subjt:  VSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AAAAAAATTAATTTTTTTTCTTTCATTCAACCTTCGTCATCTGAGCTTTATGGTGCCGCAAATTCTGGGTATCGTGGCGCCATCGAGACCTTCCTTCGAAATTTGCTTCC
ATTGATAATCTGGGAAACTACCTTATATATCAACTGCCAGTATCTGGAGTGGTCAATCATGGTGGTTTCCATGGCAATCATTCCCTCCTGCAACAATTTTGGTCGACCTC
CACATTGCTCTCGCACTCGCAGTCATAACGCTCGCAATCTCAAATTCTGCCGCCGTATCTGTTGCCATGTTCATCGGAATCGGGTCTCGTTTAATTTTGGCCCTAGTGTA
GCAGATTCGCTTCGTTATCTTAAATACAGGGATTTAGCTTCCGTCACTTGCTCGGCTTCTGATAAACCGGAAATCAGTACACCTGTTATTCAATATGAAATGAGGCTTTG
TGTAACAGTATCTGTTTTTTTTCTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTG
GTACATTGGGAGGACTGATAGCAACCACTCAACTGCTTGCTGCATTGGCAAATTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAATGGACTTGGAATAGACTTCGGA
GCAGTAGCCCTTTTCGCATTTCTTTACTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCAAGGCTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGA
CCAAAACAAAGTTATTACCATCAGCACTCTGCGTGGGATCGCTCGTCTTGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAAACAAGCGAACCTTTCA
CCGAACGACTTCTAGAACGAGGGGTATTAGTCATACCCTTTGCCACAGATGCTAGTTCACTGAATTTTGAGTTCGATGAACGTGAAGAGATGAAGGATATAACCACCAAA
AGGAAAAGACTCTGGCGCTTGACTCCGGTATACATGTCTCAGTGGTCAGCGTGGTTAGATGATCAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTATTTATC
TCTTCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTGAAAGGATTATGGTCAGGTCTTCTAGATG
GGATGGATGGGAGAGTTCTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

KKINFFSFIQPSSSELYGAANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSV
ADSLRYLKYRDLASVTCSASDKPEISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFG
AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTK
RKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Carg16916 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome