CuGenDBv2

Gene ID	Carg16981
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L30
Genome location	Carg_Chr11:6799954..6802131
RNA-Seq Expression	Carg16981
Synteny	Carg16981
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000231 - Ribosomal protein L30e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590249.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-56

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKSLPGE
Subjt:  DSDIIKSLPGE

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]

6.8e-56

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSLPGE

XP_022925483.1 60S ribosomal protein L30 [Cucurbita moschata]

2.0e-55

97.32

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKS+PG+S
Subjt:  DSDIIKSLPGES

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

1.4e-56

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKSLPGES
Subjt:  DSDIIKSLPGES

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

2.3e-56

99.11

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKS+PGES
Subjt:  DSDIIKSLPGES

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FM19 Ribosomal_L7Ae domain-containing protein

9.5e-56

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSLPGE

A0A6J1DXV1 60S ribosomal protein L30

3.3e-56

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSLPGE

A0A6J1H9H7 60S ribosomal protein L30-like

6.6e-57

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKSLPGES
Subjt:  DSDIIKSLPGES

A0A6J1HXQ4 60S ribosomal protein L30

9.5e-56

97.32

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKS+PG+S
Subjt:  DSDIIKSLPGES

A0A6J1JJ11 60S ribosomal protein L30-like

6.6e-57

100

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGES
        DSDIIKSLPGES
Subjt:  DSDIIKSLPGES

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

2.0e-50

84.68

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIK+ PGE
Subjt:  DSDIIKSLPGE

O49884 60S ribosomal protein L30

8.3e-57

94.59

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIK+LPG+
Subjt:  DSDIIKSLPGE

Q8VZ19 60S ribosomal protein L30-2

1.5e-50

83.78

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSLPGE

Q9C8F7 Putative 60S ribosomal protein L30-1

4.0e-51

85.59

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKSLPG+
Subjt:  DSDIIKSLPGE

Q9M5M6 60S ribosomal protein L30

8.6e-54

90.09

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSLPGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.8e-52

85.59

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKSLPG+
Subjt:  DSDIIKSLPGE

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.1e-51

83.78

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSLPGE

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

9.1e-51

82.88

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSLPGE
        DSDIIK+LPG+
Subjt:  DSDIIKSLPGE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGAC
CTTGAGGAACTCTAAAGGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATT
ACAATGGAAGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGCGATTCAGATATCATCAAGAGCTTGCCCGGA
GAAAGTTAG

mRNA sequence

Show/hide mRNA sequence

GGAAGAACCCGTGGGAGCTCTATATATATATTCTTGGAATTAGGGTTTTGGCTGTAGTTGAACAATCTCGGCGTGTTGAGCAGCAGCAGCTTCTAATCTTCCATCATGGT
GGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGACCTTGA
GGAACTCTAAAGGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAAT
GGAAGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGCGATTCAGATATCATCAAGAGCTTGCCCGGAGAAAG
TTAGGTTGCAGATCATAGATTTTTGTTTCAGAGTTTCATTTTAATCCACTTGATTTTGGGTTGGGCGTAGCGATATTTTGAACGAACCGTTTCGTTATAAACTCTTTTAT
GTACGAGAATGCATTAATGTCAGTTCAAATCTGTTCCTGGTTTGTATTCATAATATCAATCTTGTGAGGCATTTCAGACAAGTTTCATATCGTTAGTTTGGTTTCTAAAT
CTTCCCTGATTACAAAACAAGCATGTCTCCAAATATTACGTTAGTTCATCTTTCCTTTGATAATGCATTAATGCCCGTTCCAATCTGTTCTTGGTGTTTGTATCACATAA
TCTCAAGAACAGAATCGAAATCAAATGCCAACCCTCGGCTGCTTGGCTGGATGGATATAGCTTTCTTAATCTTGTTTGTTTCTTAAGATATGTTGGGAGATGATTTCAGT
AACGACTCTAATTGATTTAAATCCTAAGTCTATTTTCATCAAGTTTTGTGGAAGGGTCGAGATTCTAGGCATTGACATATGGATTTAACATTTATAAATTTTTGTAAGAT
ATGAA

Protein sequence

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MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPG
ES

Carg16981 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome