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Carg16990 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16990
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmalignant T-cell-amplified sequence 1 homolog
Genome locationCarg_Chr11:6919457..6920784
RNA-Seq ExpressionCarg16990
SyntenyCarg16990
Gene Ontology termsGO:0001731 - formation of translation preinitiation complex (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR016437 - MCT-1/Tma20
IPR041366 - Pre-PUA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU51475.1 hypothetical protein TSUD_413640, partial [Trifolium subterraneum]9.7e-09100Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
KAG7022358.1 hypothetical protein SDJN02_16089, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-16100Show/hide
Query:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLGFG
        MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLGFG
Subjt:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLGFG
XP_022968801.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]2.2e-0897.14Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
XP_023002904.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]3.6e-1188.37Show/hide
Query:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        +PEG+SNGFSTEEVSAQNQ KAS+ RRIRQSIAEEYPGLEPVL
Subjt:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
XP_023515958.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]2.2e-0897.14Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
TrEMBL top hitse value%identityAlignment
A0A2N9GU08 PUA domain-containing protein8.0e-0987.18Show/hide
Query:  ISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        +S+ FS+EEVSAQNQVKASVQR+IRQSIAEEYPGLEPVL
Subjt:  ISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
A0A2Z6PKU0 PUA domain-containing protein (Fragment)4.7e-09100Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
A0A6J1HC33 malignant T-cell-amplified sequence 1 homolog1.0e-0897.14Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
A0A6J1HVW2 malignant T-cell-amplified sequence 1 homolog1.0e-0897.14Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        FSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVL
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
A0A6J1KRT0 malignant T-cell-amplified sequence 1 homolog1.7e-1188.37Show/hide
Query:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        +PEG+SNGFSTEEVSAQNQ KAS+ RRIRQSIAEEYPGLEPVL
Subjt:  MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein6.1e-0977.14Show/hide
Query:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL
        F  EE+S+QNQVKASVQRRIRQSI +EYPGLE V+
Subjt:  FSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGAAGGGATTTCGAATGGGTTTTCTACTGAAGAAGTGTCTGCTCAGAATCAAGTGAAGGCATCGGTGCAACGCCGAATTCGACAAAGTATAGCAGAAGAATATCC
AGGACTAGAACCAGTTTTGGGTTTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGAAGGGATTTCGAATGGGTTTTCTACTGAAGAAGTGTCTGCTCAGAATCAAGTGAAGGCATCGGTGCAACGCCGAATTCGACAAAGTATAGCAGAAGAATATCC
AGGACTAGAACCAGTTTTGGGTTTTGGATGATTTGCTTCCTAAGAAAGCTCCTCTGATTGTAAGTAAGTGGTTAGAAATCTGCTGGCCTCTATTTATTTGTTCTGTTTAT
GTTAATGAACATATGAGGCTCATATTGGAGGCTTTTGGAATACTCTTATAGTCAGAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTTAATA
Protein sequenceShow/hide protein sequence
MPEGISNGFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLGFG