; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16991 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16991
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18
Genome locationCarg_Chr11:6921996..6924297
RNA-Seq ExpressionCarg16991
SyntenyCarg16991
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588563.1 60S ribosomal protein L18-2, partial [Cucurbita argyrosperma subsp. sororia]5.1e-66100Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYR
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYR
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYR

KAG7022359.1 60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-66100Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

XP_022931687.1 60S ribosomal protein L18-2-like [Cucurbita moschata]1.5e-6599.25Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

XP_022969995.1 60S ribosomal protein L18-2 [Cucurbita maxima]1.5e-6599.25Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

XP_023531430.1 60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo]1.5e-6599.25Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

TrEMBL top hitse value%identityAlignment
A0A1S3BPL9 60S ribosomal protein L18-22.7e-6598.51Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

A0A5A7U942 60S ribosomal protein L18-22.7e-6598.51Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1EUD5 60S ribosomal protein L18-2-like7.1e-6699.25Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1HVV8 60S ribosomal protein L18-2-like3.5e-6598.51Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQF KGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1I1I5 60S ribosomal protein L18-27.1e-6699.25Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-11.8e-5073.33Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG
        MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFG
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG

Query:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSH+KPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

O65729 60S ribosomal protein L18 (Fragment)6.4e-5680.6Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VN+PPLSLSRLI++M+GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRG KN+REAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSH+KPYVRSKGRKFE+ARG+R SRG+RV
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

P42791 60S ribosomal protein L18-21.9e-6085.82Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNK PLSLSRL++FM GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVR+KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Q4PM04 60S ribosomal protein L181.1e-4770.37Show/hide
Query:  MSRVNKPPLSLSRLIQFMK--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHF
        MSR+NKP +SL+R+ +FMK  G+E+ IAVVVGT+TDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++G +NSREA +HF
Subjt:  MSRVNKPPLSLSRLIQFMK--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHF

Query:  GPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR
        GPAPGVPHSH+KPYVRSKGRKFERARG+R SR Y+
Subjt:  GPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR

Q940B0 60S ribosomal protein L18-31.1e-5883.58Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNK PLSLSRL++FM GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHS++KPYVR KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein1.3e-5173.33Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG
        MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFG
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG

Query:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSH+KPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein1.3e-5173.33Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG
        MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFG
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFG

Query:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSH+KPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

AT3G05590.1 ribosomal protein L181.4e-6185.82Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNK PLSLSRL++FM GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHSKPYVR+KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein7.5e-6083.58Show/hide
Query:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP
        MS+VNK PLSLSRL++FM GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGP
Subjt:  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGP

Query:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHS++KPYVR KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGCAAAATTGCCGTTGTTGTTGGGACTATTACTGATGATATTCG
CGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGTTTGACATTTGATCAGCTTGCTT
TGAGGGCTCCTCTGGGTCAGAACACGGTTCTCCTTAGAGGTTGTAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGCCCCACAGCCACTCCAAG
CCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
CTACTCATTCACTGCCTCCTTTGTTTAAGTTTCTTCCTTCTAGGCCTCATTTTTGTGTTTCTCTTTCCTTGCGGTGGTTAGGGTATTGATCTTGTAGCGGGAGGTAAGAG
CAAGAAGACCAAGAGGACCGCGCCCAAATCTGATGATATCTACCTCAACTTACTCGTCAAGCTCTACCGCTTCCTTGTTCGTCGTACTGGAAGCAATTTCAATGCTGTGA
TTCTCAAGCGATTGTTCATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGCAAAATTGCCGTTGTTGTTGGGACT
ATTACTGATGATATTCGCGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGTTTGAC
ATTTGATCAGCTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTCCTTAGAGGTTGTAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGC
CCCACAGCCACTCCAAGCCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGGGTTTGATTCCATCATATTTTCCAG
GCTAATTCAATCGTTGTGTGTTTTTCTGAACTCAATATCGAAATTTTGCTAGATTTTAGTTACTTCAGTTGACTGTTTTGTCATAATATTGTTGATTAGGAATTTTGATT
CAATGGCATTCAGCCAGACTTTATTGAGTTCCTTTGGTTTGAGTTTCATTGAAATATGAGCAAGTTTTACCTTGATTTTCATTAAAATCATATTAACATC
Protein sequenceShow/hide protein sequence
MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSK
PYVRSKGRKFERARGKRNSRGYRV