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Carg17022 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17022
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription factor IIIB 90 kDa subunit-like isoform X3
Genome locationCarg_Chr09:4169274..4171645
RNA-Seq ExpressionCarg17022
SyntenyCarg17022
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0070897 - transcription preinitiation complex assembly (biological process)
GO:0000126 - transcription factor TFIIIB complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000995 - RNA polymerase III general transcription initiation factor activity (molecular function)
InterPro domainsIPR000812 - Transcription factor TFIIB
IPR011665 - Brf1, TBP-binding domain
IPR029529 - Transcription factor IIIB subunit Brf1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591886.1 hypothetical protein SDJN03_14232, partial [Cucurbita argyrosperma subsp. sororia]2.3e-11192.71Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK                  PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

KAG7024758.1 hypothetical protein SDJN02_13576, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-114100Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPP
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPP
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPP

Query:  EAYGNEYYDYENEEEYGYGYGDYGGEEED
        EAYGNEYYDYENEEEYGYGYGDYGGEEED
Subjt:  EAYGNEYYDYENEEEYGYGYGDYGGEEED

XP_022936233.1 uncharacterized protein LOC111442904 [Cucurbita moschata]1.6e-10789.88Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        G++AY FFS P SSA SDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEE HYKKIIWEQMNKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK                  PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

XP_022975738.1 uncharacterized protein LOC111475976 [Cucurbita maxima]6.3e-10186.23Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        G+ A  FFSEPLSSAASD LLSARFGSLI IMKTAEASLFSLLCKHKDEDSSSDD SEDLGDVLDSEV +YLNTKEEA YKKIIWEQ+NKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTT E+LTKK                  PAPDSSKKQEASSFEENSLS QNHSTNQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDP EAYGNEYYDYENEEEYGYGYG+YGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

XP_023536162.1 uncharacterized protein LOC111797407 [Cucurbita pepo subsp. pepo]2.0e-10285.83Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        G++AY FFSEPLS AASDLL SARFG LI+IMKTAEASLFS+LC+HKDEDSSSDDESEDLGDVLDSEV +YLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQR+TEAPINKPAQAETD TRE+LTKK                  PAPDSSKKQEASSFEENSLS QNHS NQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDP EAYGNEYYDYENEEEYGYGYGDYGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

TrEMBL top hitse value%identityAlignment
A0A0A0L0J7 BRF1 domain-containing protein8.5e-5959.58Show/hide
Query:  SLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPI
        SLI+IMKTA+ASLF +  KHKD+ S SDD+SEDLGDV DSEV +YLN ++EAHYKKIIWEQ+NKDYLQ+QAAKK+G +VVGA+A+VKKSKKRQR TEAPI
Subjt:  SLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPI

Query:  NKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGN--------------------NHVDTISE
        N PAQA+T TTRE+  KK                  PAPDSS+KQ ASS +ENS S Q H  N+LE+D E N                    NH +T+ E
Subjt:  NKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGN--------------------NHVDTISE

Query:  ENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEE
        EN     +EDP E YGNEYYD+++EEEYGYGY DYGGEEE
Subjt:  ENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEE

A0A1S3B993 uncharacterized protein LOC103487591 isoform X26.5e-5963.89Show/hide
Query:  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQ
        MK A+ASLFS+  +HKD+ S S+D+SEDLGDV DSEV +YLN ++EAHYKKIIWEQ+NKDYLQ+QAAKK+G ++VGAAA+VKKSKKR+R  EAPINKPAQ
Subjt:  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQ

Query:  AET-DTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPPEAYGNEYYDYEN
        A+T +TT E+L KK                  PAPDSS+KQ ASS +ENS S Q+H  N+LE+D E +NH +T+ EEN +D E EDP E YGNEYYD++N
Subjt:  AET-DTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPPEAYGNEYYDYEN

Query:  EEEYGYGYGDYGGEEE
        EEEYGYGY DYGGEEE
Subjt:  EEEYGYGYGDYGGEEE

A0A5D3E7S6 Transcription factor IIIB 90 kDa subunit-like isoform X36.5e-5963.89Show/hide
Query:  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQ
        MK A+ASLFS+  +HKD+ S S+D+SEDLGDV DSEV +YLN ++EAHYKKIIWEQ+NKDYLQ+QAAKK+G ++VGAAA+VKKSKKR+R  EAPINKPAQ
Subjt:  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQ

Query:  AET-DTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPPEAYGNEYYDYEN
        A+T +TT E+L KK                  PAPDSS+KQ ASS +ENS S Q+H  N+LE+D E +NH +T+ EEN +D E EDP E YGNEYYD++N
Subjt:  AET-DTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPPEAYGNEYYDYEN

Query:  EEEYGYGYGDYGGEEE
        EEEYGYGY DYGGEEE
Subjt:  EEEYGYGYGDYGGEEE

A0A6J1FCP7 uncharacterized protein LOC1114429047.5e-10889.88Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        G++AY FFS P SSA SDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEE HYKKIIWEQMNKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK                  PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

A0A6J1IK57 uncharacterized protein LOC1114759763.1e-10186.23Show/hide
Query:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK
        G+ A  FFSEPLSSAASD LLSARFGSLI IMKTAEASLFSLLCKHKDEDSSSDD SEDLGDVLDSEV +YLNTKEEA YKKIIWEQ+NKDYLQEQAAKK
Subjt:  GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKK

Query:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH
        EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTT E+LTKK                  PAPDSSKKQEASSFEENSLS QNHSTNQLEEDLEGNNH
Subjt:  EGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKK------------------PAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNH

Query:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED
        VDTISEENAIDFEDEDP EAYGNEYYDYENEEEYGYGYG+YGGEEED
Subjt:  VDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGEEED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09360.1 Cyclin/Brf1-like TBP-binding protein5.7e-0728.1Show/hide
Query:  DEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAK----KEGHDVVGA-------------------AAIVKKSKKRQRITEA
        +E + + DES++  D+ D EV  Y+N +EE HYK I W +MNKDYL+EQAAK    K   + + A                   AA  +K K++++  EA
Subjt:  DEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAK----KEGHDVVGA-------------------AAIVKKSKKRQRITEA

Query:  PINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDL----EGNNHVDTISEENAIDFEDEDPPEAYGN-EYYDYENEEEYGYG
            P     +  R  L KK            S  + S   ++   ++ E D+    E N  + +   EN  + ++++  E  GN E YD + + + G  
Subjt:  PINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDL----EGNNHVDTISEENAIDFEDEDPPEAYGN-EYYDYENEEEYGYG

Query:  YGDYGGEEED
        + +   EEE+
Subjt:  YGDYGGEEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTACTGCCGCGTACTTTTTCTTCTCGGAGCCTCTTTCGTCGGCGGCGAGTGATTTATTGCTTTCTGCGCGTTTTGGTTCTTTGATCAGCATCATGAAAACTGCTGAGGC
ATCATTGTTCAGTTTGTTGTGCAAACATAAGGATGAAGATTCTTCATCCGATGATGAGTCAGAGGATCTTGGTGATGTTCTTGACAGTGAGGTGAAAACTTACCTGAACA
CTAAGGAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATGAACAAAGACTATCTTCAGGAACAAGCAGCTAAGAAAGAAGGCCATGATGTTGTTGGAGCTGCGGCC
ATTGTCAAAAAGTCAAAGAAGAGGCAAAGGATAACAGAAGCTCCAATAAACAAACCCGCTCAAGCCGAAACAGACACAACACGCGAAATTCTAACTAAGAAGCCTGCCCC
TGACTCAAGCAAAAAGCAGGAAGCCTCGAGTTTCGAAGAGAATAGTTTATCCACACAAAACCACTCTACGAATCAGCTTGAAGAAGACCTCGAAGGCAATAATCATGTCG
ATACGATATCTGAAGAGAACGCCATCGACTTTGAAGATGAAGATCCCCCAGAAGCTTATGGTAACGAGTATTATGATTACGAAAACGAAGAAGAGTACGGTTATGGATAC
GGTGACTATGGTGGTGAAGAGGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
GGTACTGCCGCGTACTTTTTCTTCTCGGAGCCTCTTTCGTCGGCGGCGAGTGATTTATTGCTTTCTGCGCGTTTTGGTTCTTTGATCAGCATCATGAAAACTGCTGAGGC
ATCATTGTTCAGTTTGTTGTGCAAACATAAGGATGAAGATTCTTCATCCGATGATGAGTCAGAGGATCTTGGTGATGTTCTTGACAGTGAGGTGAAAACTTACCTGAACA
CTAAGGAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATGAACAAAGACTATCTTCAGGAACAAGCAGCTAAGAAAGAAGGCCATGATGTTGTTGGAGCTGCGGCC
ATTGTCAAAAAGTCAAAGAAGAGGCAAAGGATAACAGAAGCTCCAATAAACAAACCCGCTCAAGCCGAAACAGACACAACACGCGAAATTCTAACTAAGAAGCCTGCCCC
TGACTCAAGCAAAAAGCAGGAAGCCTCGAGTTTCGAAGAGAATAGTTTATCCACACAAAACCACTCTACGAATCAGCTTGAAGAAGACCTCGAAGGCAATAATCATGTCG
ATACGATATCTGAAGAGAACGCCATCGACTTTGAAGATGAAGATCCCCCAGAAGCTTATGGTAACGAGTATTATGATTACGAAAACGAAGAAGAGTACGGTTATGGATAC
GGTGACTATGGTGGTGAAGAGGAAGATTAG
Protein sequenceShow/hide protein sequence
GTAAYFFFSEPLSSAASDLLLSARFGSLISIMKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEEAHYKKIIWEQMNKDYLQEQAAKKEGHDVVGAAA
IVKKSKKRQRITEAPINKPAQAETDTTREILTKKPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPPEAYGNEYYDYENEEEYGYGY
GDYGGEEED