CuGenDBv2

Gene ID	Carg17039
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tRNA_edit domain-containing protein
Genome location	Carg_Chr09:4264511..4265610
RNA-Seq Expression	Carg17039
Synteny	Carg17039
Gene Ontology terms	GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
InterPro domains	IPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily IPR040285 - Prolyl-tRNA editing protein ProX/PRXD1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591900.1 hypothetical protein SDJN03_14246, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-32

82.83

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVR
        MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLK               VLSARLGLGKGGLRMASEETLDKKLK++
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVR

KAG7024774.1 hypothetical protein SDJN02_13592 [Cucurbita argyrosperma subsp. argyrosperma]

7.1e-50

100

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVRT
        MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVRT
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVRT

Query:  SIFREILAV
        SIFREILAV
Subjt:  SIFREILAV

KGN54578.1 hypothetical protein Csa_012651 [Cucumis sativus]

4.5e-20

58.62

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ                  DKKNRYYI SA ADTK+ LK               VLS RLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

XP_004142621.1 proline--tRNA ligase [Cucumis sativus]

4.5e-20

58.62

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ                  DKKNRYYI SA ADTK+ LK               VLS RLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

XP_038898012.1 prolyl-tRNA synthetase associated domain-containing protein 1 [Benincasa hispida]

2.6e-20

59.48

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TREELL+LLQ+LQIDFSRYEHPAVL VEAQ                  DKKNRYYI SA AD K+ LK               VLSARLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYL1 tRNA_edit domain-containing protein

2.2e-20

58.62

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ                  DKKNRYYI SA ADTK+ LK               VLS RLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

A0A1S3BAG3 prolyl-tRNA synthetase associated domain-containing protein 1

3.7e-20

57.76

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TRE+LL LLQ+LQ+DFSRYEHPAVL VEAQ                  DKKNRYYI SA ADTK+ LK               VLS RLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

A0A6J1CAT2 uncharacterized protein LOC111009964

3.1e-19

57.76

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TREELL+LLQ+ QI FS+YEHPAVL VEAQ                  DKKNRYYI SA ADTK+ LK               VLSARLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

A0A6J1FN76 prolyl-tRNA synthetase associated domain-containing protein 1

1.1e-19

56.9

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TREELL+LLQ+LQIDF++YEHPAVL VEAQ                  DKKNRYY+ SA A TK+ LK               VLSARLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

A0A6J1J0V9 prolyl-tRNA synthetase associated domain-containing protein 1

1.1e-19

56.9

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Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG
        MA+EV TREELL+LLQ+LQIDFS+YEHPAVL VEAQ                  DKKNRYY+ SA + TK+ LK               VLSARLGLGKG
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKG

Query:  GLRMASEETLDKKLKV
        GLRMA EE L +KLKV
Subjt:  GLRMASEETLDKKLKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G44835.1 YbaK/aminoacyl-tRNA synthetase-associated domain

5.4e-16

46.36

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Query:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMAS
        T+++LL  LQEL+ID+S+YEHP VL VE Q                  DKK+RYYI SA  DTK+ +K               VLS RLGLGKGG+RMA 
Subjt:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMAS

Query:  EETLDKKLKV
        EE L + L+V
Subjt:  EETLDKKLKV

AT1G44835.2 YbaK/aminoacyl-tRNA synthetase-associated domain

5.4e-16

46.36

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Query:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMAS
        T+++LL  LQEL+ID+S+YEHP VL VE Q                  DKK+RYYI SA  DTK+ +K               VLS RLGLGKGG+RMA 
Subjt:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ------------------DKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMAS

Query:  EETLDKKLKV
        EE L + L+V
Subjt:  EETLDKKLKV

Sequences

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CDS sequence

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ATGGCGGAGGAGGTTGTCACCAGGGAAGAGTTGCTTTCGCTGTTGCAGGAGCTTCAAATTGATTTTTCCAGATACGAACATCCTGCTGTATTGGCGGTTGAAGCACAGGA
CAAAAAGAACAGATACTATATTGATTCTGCATCAGCAGACACCAAAATATTCCTAAAAGGTCTGTACACTTTACTAGTGCCTGTGATTCCTACTAATCATGAAGTTCTAT
CTGCAAGGCTTGGTTTGGGTAAAGGAGGTCTGAGAATGGCTTCCGAGGAAACATTGGACAAGAAACTTAAGGTTAGAACTAGCATTTTCAGGGAAATTCTGGCTGTGTGA

mRNA sequence

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TTGTTGAGTTTGGATTTCCAAAGGTGTTTCATCTTGGTGTAAACTTTCGTTATCAAGGCCTAATCTCTCCGGCGTACTTCTTTGCTCTGAATTTGTGCTTTCTCCTTCAG
TATGGCGGAGGAGGTTGTCACCAGGGAAGAGTTGCTTTCGCTGTTGCAGGAGCTTCAAATTGATTTTTCCAGATACGAACATCCTGCTGTATTGGCGGTTGAAGCACAGG
ACAAAAAGAACAGATACTATATTGATTCTGCATCAGCAGACACCAAAATATTCCTAAAAGGTCTGTACACTTTACTAGTGCCTGTGATTCCTACTAATCATGAAGTTCTA
TCTGCAAGGCTTGGTTTGGGTAAAGGAGGTCTGAGAATGGCTTCCGAGGAAACATTGGACAAGAAACTTAAGGTTAGAACTAGCATTTTCAGGGAAATTCTGGCTGTGTG
A

Protein sequence

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MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQDKKNRYYIDSASADTKIFLKGLYTLLVPVIPTNHEVLSARLGLGKGGLRMASEETLDKKLKVRTSIFREILAV

Carg17039 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome