; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17072 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17072
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA exonuclease 4
Genome locationCarg_Chr09:4453142..4457317
RNA-Seq ExpressionCarg17072
SyntenyCarg17072
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591931.1 RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. sororia]7.2e-141100Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]3.2e-12588.97Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        M+SQLKK  KPKLLNPNWALLQQKLNPHGS  S++V KSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        +VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRDTSEYQFFQ+ GC+RALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AE L VEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

XP_022935723.1 RNA exonuclease 4 [Cucurbita moschata]8.0e-14099.24Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

XP_022976561.1 RNA exonuclease 4 [Cucurbita maxima]1.3e-13797.72Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKK AK KLLNPNWALLQQKLNPHGS+RSS+VPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIY+EFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRR+LRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

XP_023535411.1 RNA exonuclease 4 [Cucurbita pepo subsp. pepo]3.0e-13998.86Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASS TLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 41.6e-12588.97Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        M+SQLKK  KPKLLNPNWALLQQKLNPHGS  S++V KSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        +VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRDTSEYQFFQ+ GC+RALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AE L VEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

A0A1S3CJW0 RNA exonuclease 46.0e-12588.68Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGR
        M SQLKK  KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGR

Query:  VTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRH
        VT+VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DVRDTSEYQFFQ+ GC+RALRH
Subjt:  VTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRH

Query:  LAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        LAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  LAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

A0A6J1FBB2 RNA exonuclease 43.9e-14099.24Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

A0A6J1IH78 RNA exonuclease 46.2e-13897.72Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
        MESQLKK AK KLLNPNWALLQQKLNPHGS+RSS+VPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVT

Query:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA
        VVNKWGNVIY+EFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRR+LRHLA
Subjt:  VVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLA

Query:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
Subjt:  AEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

E5GBF8 RNA exonuclease 46.0e-12588.68Show/hide
Query:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGR
        M SQLKK  KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGR

Query:  VTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRH
        VT+VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DVRDTSEYQFFQ+ GC+RALRH
Subjt:  VTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRH

Query:  LAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE
        LAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  LAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 43.3e-4052.17Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKD
        +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  ++ A  F   QK+ A++++GRILVGHAL++DL+AL+LSHPK  
Subjt:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKD

Query:  VRDTSEYQFFQR---GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK
        +RDTS +  F++    G   +L+ L  EVL + IQ GEH  VEDAR+ MLLY+K+  E+EK
Subjt:  VRDTSEYQFFQR---GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK

Q6DEW6 RNA exonuclease 45.5e-4346.53Show/hide
Query:  EESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG
        E +  + +K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D++  + F  VQ  VAE+++G
Subjt:  EESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG

Query:  RILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKP
        R LVGHA+ NDLK L L HPKK +RDT +Y+ F+      R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K WE ++KA+       K + P
Subjt:  RILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKP

Query:  RK
        +K
Subjt:  RK

Q6PAQ4 RNA exonuclease 44.2e-4350Show/hide
Query:  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +L++ ++F  V+K VAE++KGRILVGHAL NDLK L L H
Subjt:  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQ---RGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKS
        PKK +RDT +++ F+   + G R +L+ L+ ++LG+ +Q  EHC ++DA++AM LY    +EWE S
Subjt:  PKKDVRDTSEYQFFQ---RGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKS

Q91560 RNA exonuclease 43.8e-4447.45Show/hide
Query:  KLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHAL
        K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D++K + F  VQK V+E+++GR LVGHA+
Subjt:  KLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHAL

Query:  RNDLKALLLSHPKKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVK--LKLKQKKRKPRK
         NDLK L L HPKK +RDT +Y+ F++     R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K WE ++KA+    + + +K + P+K
Subjt:  RNDLKALLLSHPKKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 43.2e-4350.9Show/hide
Query:  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +L++ ++   VQK VAE++KGRILVGHAL NDLK L L H
Subjt:  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFF--QRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK
        PKK +RDT +Y+ F  Q    R +LR L+ ++LG+++Q  EHC ++DA++AM LY    KEWE   +
Subjt:  PKKDVRDTSEYQFF--QRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein3.7e-1835.84Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL
        +A+DCEMVG G  G       V +V+   NVI+   V+P+  V D+R EI+G+   DL+       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE
         L +P   +RDT++Y    +     ++L++L    LG +IQ G+H   ED  SAM LY++ + +E   S KAE
Subjt:  LLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE

AT2G48100.2 Exonuclease family protein3.7e-1835.84Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL
        +A+DCEMVG G  G       V +V+   NVI+   V+P+  V D+R EI+G+   DL+       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE
         L +P   +RDT++Y    +     ++L++L    LG +IQ G+H   ED  SAM LY++ + +E   S KAE
Subjt:  LLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-9366.67Show/hide
Query:  MESQLKKRAKPKL------LNPNWALLQQKL--NPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGN
        M S LK++ K K+      LNPNW+LLQQKL  + HG+ R SS P++ +S   +LGKRK+R D E D      L PVNDD SLTD VAMDCEMVGV QG 
Subjt:  MESQLKKRAKPKL------LNPNWALLQQKL--NPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGN

Query:  KSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGC
        KSALGRVT+VNKWGNV+YDEFVRP+E VVDFRT ISGIRP DLRKAKDF   Q +VAELIKG+ILVGHAL NDLKALLL+HPKKD+RDT EYQ F +G  
Subjt:  KSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGC

Query:  RRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDG
        R++L+HLA+E+LG +IQNGEHCP++DAR+AM+LYQK  KEWEK+VK + ++ LKQKKRKP+KK+K G
Subjt:  RRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein5.2e-2034.13Show/hide
Query:  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELI--------------KGRILVGHAL
        VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R E +GIRP +LR A     VQ+++ E +              K RILVGH L
Subjt:  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELI--------------KGRILVGHAL

Query:  RNDLKALLLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK
         +DL  L L +P   +RDT++Y    +      +L++L    LG ++  G   P ED  + M LY +
Subjt:  RNDLKALLLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK

AT5G40310.1 Exonuclease family protein4.4e-1934.13Show/hide
Query:  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELI--------------KGRILVGHAL
        VVA+ C+MVG G  G+     RV + ++  NV++  +V+P   V ++R E++GIRP +LR A      Q++V E +              K RILVGH L
Subjt:  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELI--------------KGRILVGHAL

Query:  RNDLKALLLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK
         N L +L L +    +RDT+EY    +      +L++L    LG +I  G   P ED  + M LY +
Subjt:  RNDLKALLLSHPKKDVRDTSEY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTCAGCTCAAGAAGAGAGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAGGCGATCCTCCAGTGTACC
GAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTA
GTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATAC
GATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAG
AGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGT
ATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGC
TCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAA
GGATGGAGGTGGTGTTGAATAA
mRNA sequenceShow/hide mRNA sequence
CCTTCCTCTCTTATCCCGTTGAGGGCCGCCGGGCGAGAAGACGGCCGAAGTCGACAGGTATTAGTAGTATGTGAATTGCGGGAGTTGGCCTTCGAAGTGGAGCTTCAAGA
TTATGGAGTCTCAGCTCAAGAAGAGAGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAGGCGATCCTCCAGTGTA
CCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTT
TAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATAT
ACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAG
AGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGA
GTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTC
GCTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCC
AAGGATGGAGGTGGTGTTGAATAAACGATCAAACTCCTGATATCTTAATCTGATGCAGATCTTACAAAAATGTGGAACTTGCTGCCGTAGAATTGAGTAGAGATTATAGT
CATTCTTTATTTTGAGTGAGACCATTGGCCTGTGTTCTTGGCCAAATTTTGATCTTCAAGCTCAAGAACTACAGGTTACTAATATTGTACCGATACGTCAACTTAATATC
GTAAAGCAACTTTTAATCTCAAACACAATCACGTGTCTCGTATTGATCTAATTTTGGTCTAGTTAGATACACAAGTAAAGCTACTATAGCGTTAAAGTGCACTAAATACC
TTCTCACTTGATCTTATATCGC
Protein sequenceShow/hide protein sequence
MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIY
DEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDAR
SAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE