; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17075 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17075
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationCarg_Chr09:4462693..4464028
RNA-Seq ExpressionCarg17075
SyntenyCarg17075
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591934.1 hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sororia]5.1e-72100Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

XP_022935733.1 uncharacterized protein At4g28440-like [Cucurbita moschata]8.7e-7298.61Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        FKGSMRLAVDKWGRIEVVEPENF+VKEDNNLSL+EYELVNVAEE
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

XP_022976598.1 uncharacterized protein At4g28440-like [Cucurbita maxima]1.5e-6896.48Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+M
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVA
        FKGSMRLAVDKWGRIEVVEP+NF+VKEDNNLSLVEYELVNVA
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVA

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]6.6e-7299.31Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        FKGSMRLAVDKWGRIEVVEPENF+VKEDNNLSLVEYELVNVAEE
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.9e-6688.31Show/hide
Query:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ EPE+F+VKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein2.0e-6687.66Show/hide
Query:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+F+VKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like1.2e-6687.66Show/hide
Query:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+F+VKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding1.2e-6687.66Show/hide
Query:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+F+VKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like4.2e-7298.61Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        FKGSMRLAVDKWGRIEVVEPENF+VKEDNNLSL+EYELVNVAEE
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

A0A6J1IMN6 uncharacterized protein At4g28440-like7.4e-6996.48Show/hide
Query:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
        MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+M
Subjt:  MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM

Query:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVA
        FKGSMRLAVDKWGRIEVVEP+NF+VKEDNNLSLVEYELVNVA
Subjt:  FKGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVA

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284406.1e-4468.94Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNV
        DKWGRIE     +F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.3e-4466.67Show/hide
Query:  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
        S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD
Subjt:  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD

Query:  KWGRIEVV-EPENFIVKEDNNLSLVEYELVNV
        +WGR+EV  EP +  VK+DNNLSL+EYELV+V
Subjt:  KWGRIEVV-EPENFIVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.3e-4466.67Show/hide
Query:  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
        S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD
Subjt:  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD

Query:  KWGRIEVV-EPENFIVKEDNNLSLVEYELVNV
        +WGR+EV  EP +  VK+DNNLSL+EYELV+V
Subjt:  KWGRIEVV-EPENFIVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein6.4e-4966.42Show/hide
Query:  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        ++++GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC++GDETG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAV
Subjt:  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAE
        DKWGR+EV EP +F VKED N+SL+EYELVNV E
Subjt:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein1.3e-4969.23Show/hide
Query:  TEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMF
        ++  P   +    +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECL+GDET  ILFTARNDQV+ +KPG T+ LRNAKIDMF
Subjt:  TEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMF

Query:  KGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE
        KGSMRLAVDKWGRIE  EP +  VKEDNNLSLVEYELVNV EE
Subjt:  KGSMRLAVDKWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein4.3e-4568.94Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNV
        DKWGRIE     +F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIEVVEPENFIVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGTACTAATGGCCACACACTCATCGT
CAAGGTCGTTAGCTCCAATACCGTGTTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTT
TGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCCATGAGGCTCGCAGTCGAT
AAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCATCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
AGGGAGAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGC
ATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGTACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGTTGC
AGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGAT
CAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCCATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCC
CGAAAATTTCATCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAAT
GGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAATCTCACACACA
GTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCTGGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTCTGGGATCTATTTGATATTTTTGAAATTTAAA
GACCGTGATAGCTCA
Protein sequenceShow/hide protein sequence
MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
KWGRIEVVEPENFIVKEDNNLSLVEYELVNVAEE