; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17103 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17103
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationCarg_Chr09:4608836..4609252
RNA-Seq ExpressionCarg17103
SyntenyCarg17103
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024835.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-71100Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

XP_022936830.1 uncharacterized protein LOC111443299 [Cucurbita moschata]1.3e-6997.83Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]6.6e-6996.38Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]4.6e-7097.83Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLLQLHSRPPSTLFFPAIKSHL VVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]8.9e-5883.33Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+T LL+FPLLQ H RPPSTLFFPA+KSHLSVVSI FPT+QFL NPSH  A F LMAK PK+D++EQKWS+EGS+V+SLPNGMFRVRLDNEDLILGYI 
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V7J3 Translation initiation factor IF-18.1e-5783.21Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLL+FPLLQ H RPPSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK PK+D++EQK S+EGS+V+SLPNGMFRVRLDNEDLILGYI 
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS

A0A6J1FET6 uncharacterized protein LOC1114432996.4e-7097.83Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.1e-5681.02Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLL+FPLLQ   RPPST  FPAIKSH+SVVSI FP+SQFL NPSHGP  F  MAK PKS+S+EQK+S+EGS+++SLPNGMFRV+LDNEDLILGYI 
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS

A0A6J1IP00 uncharacterized protein LOC1114769473.2e-6996.38Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like5.3e-5681.02Show/hide
Query:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLL+FPLLQ   RPP T  FP  KSHLSVVSI FP+SQFL NPSHGPA FA MAK PKS+S+EQK+S+EGS+++SLPNGMFRV+LDNEDLILGYI 
Subjt:  MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic2.9e-2777.14Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQKW++EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST+GRI+YR R+
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q09G11 Translation initiation factor IF-1, chloroplastic2.9e-2778.57Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQKW +EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST+GRI+YR RS
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic6.5e-2777.14Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQKW +EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST+GRI+YR R+
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q94KR7 Translation initiation factor IF-1, chloroplastic2.2e-3060.61Show/hide
Query:  HSRPPSTLFFPAIKSHLSVVSIAFP----TSQFLRNPSHGPARFAL----MAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKN
        H  P  T F P          +A P    T  FL  P   PA  AL     AKP KS   EQKW +EG I++SLPNGMFRVRLDNEDLILGYI GKIRKN
Subjt:  HSRPPSTLFFPAIKSHLSVVSIAFP----TSQFLRNPSHGPARFAL----MAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKN

Query:  FVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS
        +VRILPGDRV+VEV+RYDS+KGRIVYR RSS+
Subjt:  FVRILPGDRVRVEVSRYDSTKGRIVYRHRSSS

Q94KR9 Translation initiation factor IF-1, chloroplastic2.2e-2776.06Show/hide
Query:  STEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHR
        S EQKW++EGSI +SLPNGMFRV+LDN D++LGYI GKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YR R
Subjt:  STEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein4.5e-2360.92Show/hide
Query:  GPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        G A  +  AKP   + +  K   EG + +SLPNGMFRV L+N D ILGYICGKIRKNF+RILPGD+V+VE+S YDSTKGRI++R  S
Subjt:  GPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAACACTAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATCAAATCGCATCTCTCCGTCGTATCGATCGC
TTTTCCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAG
GCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGCAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAACACTAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATCAAATCGCATCTCTCCGTCGTATCGATCGC
TTTTCCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAG
GCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGCAGTAGTTAG
Protein sequenceShow/hide protein sequence
MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRHRSSS