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Carg17128 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17128
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSAP30_Sin3_bdg domain-containing protein
Genome locationCarg_Chr01:12590808..12592056
RNA-Seq ExpressionCarg17128
SyntenyCarg17128
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0000118 - histone deacetylase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR024145 - Histone deacetylase complex subunit SAP30/SAP30-like
IPR025718 - Histone deacetylase complex subunit SAP30, Sin3 binding domain
IPR038291 - SAP30, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037842.1 hypothetical protein SDJN02_01473, partial [Cucurbita argyrosperma subsp. argyrosperma]8.6e-66100Show/hide
Query:  MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLV
        MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLV
Subjt:  MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLV

Query:  DVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
        DVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Subjt:  DVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK

XP_022144205.1 uncharacterized protein LOC111013658 isoform X1 [Momordica charantia]7.5e-5491.06Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHR R+RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVD+VQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

XP_022939981.1 uncharacterized protein LOC111445752 isoform X1 [Cucurbita moschata]1.4e-5593.5Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

XP_022982128.1 uncharacterized protein LOC111481057 isoform X2 [Cucurbita maxima]1.8e-5593.5Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

XP_038903295.1 uncharacterized protein LOC120089924 [Benincasa hispida]5.8e-5492.68Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        NI       ASDDTLKSHR R RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

TrEMBL top hitse value%identityAlignment
A0A6J1CR00 uncharacterized protein LOC111013658 isoform X13.6e-5491.06Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHR R+RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVD+VQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

A0A6J1FHA1 uncharacterized protein LOC111445752 isoform X16.6e-5693.5Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

A0A6J1FID1 uncharacterized protein LOC111445752 isoform X26.2e-5492.68Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM VDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

A0A6J1IVT7 uncharacterized protein LOC111481057 isoform X18.1e-5492.68Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM VDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

A0A6J1J423 uncharacterized protein LOC111481057 isoform X28.7e-5693.5Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        QLDELQVIVGFVHAAKRLKTVCK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19330.1 unknown protein1.9e-3971.93Show/hide
Query:  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIV
        AS+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +MKVDL KLEM AL  YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIV
Subjt:  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIV

Query:  GFVHAAKRLKTVCK
        GFV AAKR+K  CK
Subjt:  GFVHAAKRLKTVCK

AT1G19330.2 unknown protein5.6e-3966.67Show/hide
Query:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
        N         S+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +MKVDL KLEM AL  YWRHFNLVDA PNPSKEQL+D+VQRHFMSQ
Subjt:  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ

Query:  QLDELQVIVGFVHAAKRLKTVCK
        Q+DELQVIVGFV AAKR+K  CK
Subjt:  QLDELQVIVGFVHAAKRLKTVCK

AT1G19330.3 unknown protein4.7e-3871.3Show/hide
Query:  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-KVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVI
        AS+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +M KVDL KLEM AL  YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVI
Subjt:  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-KVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVI

Query:  VGFVHAAKRLKTVCK
        VGFV AAKR+K  CK
Subjt:  VGFVHAAKRLKTVCK

AT1G75060.1 unknown protein4.1e-3458.91Show/hide
Query:  EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQ
        E+  S   +H S  T ++DTLK H+ + R H+SS  S K + R  S +S SK S  TPR +MKVDL KL+M+AL RYWRHFNLVDA PNP+KEQL+D++Q
Subjt:  EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQ

Query:  RHFMSQQLDELQVIVGFVHAAKRLKTVCK
        RHFMSQQ+DELQVIVGFV AA  +K  C+
Subjt:  RHFMSQQLDELQVIVGFVHAAKRLKTVCK

AT1G75060.2 unknown protein3.9e-3258.14Show/hide
Query:  EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQ
        E+  S   +H S  T ++DTLK H+ + R H+SS  S K + R  S +S SK S  TPR +M VDL KL+M+AL RYWRHFNLVDA PNP+KEQL+D++Q
Subjt:  EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQ

Query:  RHFMSQQLDELQVIVGFVHAAKRLKTVCK
        RHFMSQQ+DELQVIVGFV AA  +K  C+
Subjt:  RHFMSQQLDELQVIVGFVHAAKRLKTVCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATAAGAGAAATCGCAAGCAGTATAAATATATCTCATCGAAGCCCCACTACTGCATCTGATGATACTTTGAAGTCCCATAGACTGAGATATAGGACACACAAATC
GTCGGGATCATCACACAAAACTATCAGCCGATCCTTCTCGTATGAATCTCAGTCCAAGGGGTCTATTTCGACCCCTCGTGGGTCCATGAAGGTTGACCTCGGTAAACTGG
AAATGTCTGCTCTATGGAGATATTGGCGACACTTCAATCTCGTCGATGCTTTTCCTAACCCATCGAAAGAGCAGTTGGTGGATGTCGTTCAAAGGCATTTCATGTCACAG
CAATTAGACGAGTTGCAGGTGATTGTCGGGTTCGTCCATGCTGCAAAGAGACTCAAAACCGTTTGCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATAAGAGAAATCGCAAGCAGTATAAATATATCTCATCGAAGCCCCACTACTGCATCTGATGATACTTTGAAGTCCCATAGACTGAGATATAGGACACACAAATC
GTCGGGATCATCACACAAAACTATCAGCCGATCCTTCTCGTATGAATCTCAGTCCAAGGGGTCTATTTCGACCCCTCGTGGGTCCATGAAGGTTGACCTCGGTAAACTGG
AAATGTCTGCTCTATGGAGATATTGGCGACACTTCAATCTCGTCGATGCTTTTCCTAACCCATCGAAAGAGCAGTTGGTGGATGTCGTTCAAAGGCATTTCATGTCACAG
CAATTAGACGAGTTGCAGGTGATTGTCGGGTTCGTCCATGCTGCAAAGAGACTCAAAACCGTTTGCAAATGA
Protein sequenceShow/hide protein sequence
MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQ
QLDELQVIVGFVHAAKRLKTVCK