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Carg17151 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17151
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 3
Genome locationCarg_Chr01:12701463..12701783
RNA-Seq ExpressionCarg17151
SyntenyCarg17151
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608542.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-51100Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQV
        TKSFQV
Subjt:  TKSFQV

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]9.0e-3489.53Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+A GFYSSWT RENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELL RDV KIEAGQVQIPLYKN GYNG
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]3.1e-5099.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

XP_022981879.1 protein RADIALIS-like 4 [Cucurbita maxima]1.4e-5099.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

XP_023525025.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]4.8e-51100Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein4.8e-3386.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A5A7TE80 Protein RADIALIS-like 34.8e-3386.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A6J1DP29 protein RADIALIS-like 44.4e-3489.53Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+A GFYSSWT RENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELL RDV KIEAGQVQIPLYKN GYNG
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A6J1FIP0 protein RADIALIS-like 31.5e-5099.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

A0A6J1J319 protein RADIALIS-like 46.7e-5199.05Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.2e-1857.83Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG
        MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YELLV+D+N IE G V  P Y+  G
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG

Q1A173 Protein RADIALIS-like 61.8e-1655.29Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y++LV D+  IE G+V +P YK    N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

Q1G3C4 Protein RADIALIS-like 41.2e-1760.49Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN
        MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YELL+RDVN IE+G+   P Y+N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 32.9e-1962.35Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+S +++    +SWT +ENK FE ALA YDQDTPDR+ NVARAV GGK+AEEVRR YELL+RDVN IE+G+   P Y++ G N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

Q9SIJ5 Protein RADIALIS-like 21.6e-1757.65Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+LLVRD+  IE G V  P YK    N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

Arabidopsis top hitse value%identityAlignment
AT1G75250.1 RAD-like 61.3e-1755.29Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y++LV D+  IE G+V +P YK    N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

AT1G75250.2 RAD-like 61.3e-1755.29Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y++LV D+  IE G+V +P YK    N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

AT2G18328.1 RAD-like 48.7e-1960.49Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN
        MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YELL+RDVN IE+G+   P Y+N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.1e-1857.65Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+LLVRD+  IE G V  P YK    N
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

AT4G39250.1 RAD-like 15.1e-1957.83Show/hide
Query:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG
        MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YELLV+D+N IE G V  P Y+  G
Subjt:  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA
Protein sequenceShow/hide protein sequence
MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQV