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Carg17153 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17153
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationCarg_Chr01:12709349..12710284
RNA-Seq ExpressionCarg17153
SyntenyCarg17153
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466545.1 PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo]9.4e-5880.14Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGGV A
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

XP_022940046.1 uncharacterized protein LOC111445795 [Cucurbita moschata]1.8e-77100Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

XP_022982140.1 uncharacterized protein LOC111481065 [Cucurbita maxima]9.0e-7799.31Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

XP_023525160.1 uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo]1.2e-7698.62Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEA LDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANV+ASRLGRGGVGA
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

XP_038898962.1 uncharacterized protein LOC120086405 [Benincasa hispida]1.4e-5882.07Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE KK+E GG NLQRS+S+PPF T KG L+MESE +L+ KPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
         WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLG GGV A
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

TrEMBL top hitse value%identityAlignment
A0A1S3CST6 uncharacterized protein LOC1035039304.5e-5880.14Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGGV A
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

A0A5D3D820 Putative DNA polymerase epsilon catalytic subunit A4.5e-5880.14Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGGV A
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

A0A6J1DA26 uncharacterized protein LOC1110182414.5e-5880.82Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKK
        MGSLMAGW   ASDPE+VSHRRNKSLT+EEIEAFWKTKKQL EEHL+AIL  P +S +EIKKVEFGG NLQRS+SVPP NT K F+ MESEA L+ KPKK
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        NGWWRRSNWAFLNEPPV EGSGN YVSQFHVANVAAS+ GRGGV A
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

A0A6J1FHE8 uncharacterized protein LOC1114457958.8e-78100Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

A0A6J1J1T2 uncharacterized protein LOC1114810654.4e-7799.31Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein9.8e-2142.54Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+  EE         Q+  ++   E   +  +   SV              +   +N+ K +
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVA
        GWWR++ WAFLNEP   EG  N+YVSQF VA++A
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGAC
GAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCT
CTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTT
CTAAACGAACCGCCTGTGATCGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
TTGAAGAGAGAAAAGAAAAGCTTGTATTTTGAGAGATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCA
TTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGT
GGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGA
AAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATCGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCC
TCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGAAAAACCCTGGTCGGATTTGTATGTGTTCCGATAATGTAAAGAAAGAAATAAGAATAGTAATTATATTAGAATTCTTC
TAAATTCGAGTGGTCAGTTTATAATTTTATGGGTTTTTTTTAAAATTTTTTTAAAATCATTTTATGACGTGGAAGTATTGTGTAAAAATATTAGATATTTTATATATACA
GTCTCATATTGAGAT
Protein sequenceShow/hide protein sequence
MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAF
LNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA