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Carg17202 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17202
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBRCA1-A complex subunit BRE
Genome locationCarg_Chr01:12949296..12952735
RNA-Seq ExpressionCarg17202
SyntenyCarg17202
Gene Ontology termsGO:0006302 - double-strand break repair (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070531 - BRCA1-A complex (cellular component)
GO:0070552 - BRISC complex (cellular component)
InterPro domainsIPR010358 - BRCA1-A complex subunit BRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608599.1 BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. sororia]2.4e-71100Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

KAG7037916.1 BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-71100Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

XP_022940533.1 BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]1.6e-7099.28Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

XP_023525358.1 BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]2.4e-71100Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

XP_023525359.1 BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita pepo subsp. pepo]2.4e-71100Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

TrEMBL top hitse value%identityAlignment
A0A5A7VCG0 BRCA1-A complex subunit BRE4.2e-6996.38Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFCRTATVI ASGVFTFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

A0A6J1FKI1 BRCA1-A complex subunit BRE7.6e-7199.28Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

A0A6J1FPK2 BRCA1-A complex subunit BRE7.6e-7199.28Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

A0A6J1J0M3 BRCA1-A complex subunit BRE1.1e-6997.1Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVL+AVSLINVRR FIEAL+SFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAER+FEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

A0A6J1J2U1 BRCA1-A complex subunit BRE1.1e-6997.1Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        MAEYLPHLEESLEKQVL+AVSLINVRR FIEAL+SFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        DYPWSPRWEPLQMAER+FEFLADEALSFKRYCNEAQLQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

SwissProt top hitse value%identityAlignment
A6QQW8 BRISC and BRCA1-A complex member 23.6e-0934.19Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI
        + +Y+P +   L  +V   +   + RR +I A  S FG   +E D       T++     F FLVH  +   FP+ QP+L  QS  HF + G  + SQ  
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI

Query:  TDYPWSPRWEPLQMAER
         +YP+SPRW+  +MA+R
Subjt:  TDYPWSPRWEPLQMAER

Q568D5 BRISC and BRCA1-A complex member 21.1e-1035.9Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI
        + +Y+P + + L  +V   +   + RR +I A  S FG   +E D V     T++     F FLVH  +   FP+ QP+L  QS  HF S G  + SQ+ 
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI

Query:  TDYPWSPRWEPLQMAER
          YP+SPRW+  +MA+R
Subjt:  TDYPWSPRWEPLQMAER

Q5ZML0 BRISC and BRCA1-A complex member 21.2e-0934.19Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI
        + +Y+P + + L  +V   +   + RR +I A  S FG   +E D       T++     F FLVH  +   FP+ QP+L  QS  HF + G  + SQ  
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI

Query:  TDYPWSPRWEPLQMAER
         +YP+SPRW+  +MA+R
Subjt:  TDYPWSPRWEPLQMAER

Q6DJ78 BRISC and BRCA1-A complex member 27.2e-1034.19Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI
        + +Y+P + + L  +V   +   + RR +I A  S FG   +E D       T++ +   F FLVH  +   FP+ QP+L  QS  HF + G  + SQ  
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI

Query:  TDYPWSPRWEPLQMAER
         +YP+SPRW+  +MA+R
Subjt:  TDYPWSPRWEPLQMAER

Q6P7Q1 BRISC and BRCA1-A complex member 22.7e-0934.19Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI
        + +Y+P +   L  +V   +   + RR +I A  S FG   +E D       T++     F FLVH  +   FP+ QP+L  QS  HF + G  + SQ  
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLI

Query:  TDYPWSPRWEPLQMAER
         +YP+SPRW+  +MA+R
Subjt:  TDYPWSPRWEPLQMAER

Arabidopsis top hitse value%identityAlignment
AT5G42470.1 CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).8.6e-5165.94Show/hide
Query:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT
        +AEYLPHLEE+LE+Q+ EAV+ I++RR FIEAL    GRPLEADP FCR AT + ASG FTF+VHF  STQFPK+QP+L+LQS QH N    P+KS L+T
Subjt:  MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLIT

Query:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ
        +YPWSPRWE  +MAER+ +FL DEA++FK+YCNEA LQ
Subjt:  DYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTT
TGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTCCCAA
AGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCA
TTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTT
TGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTCCCAA
AGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCA
TTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCA
ATCTGCCCTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGGCATTGTCTCCCTCGATGAGGATGATTCGAACGTACATTT
TATCGAGTACCGGATGTGAGCTTTCAAATTTCGAGAATCCGTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGATGACCCTCAACGGGGCTGACCATGAATGCTGTAT
TACATTTTTTTTTTTTCTGTTGAACAGAGCAAAATCAACTTACCAATTATGCGTGTTGCTTAAAATGCTCTCTTTGTAGGATCGGACTTAATTGAGAGTGGTTTCAAAAT
AAGGTCTTCATGAATTTTGTCCCTTCATTTTTAAAACGTTTCAATATCAATGATTCAGCATGCATCAATGGAGTTAGACAAGCTTGACTATGGTAGGGACTAATTTGAAA
ATTGTTAAAATGATTTTTGATCTCTCACTGTCTTTGAGGCTTGAAAATTTAAGTCAAAAGAACTGAAATAGCACGAACAGGAGCACATAGCACACAAGGGAGAAACGACC
AAAGGAGTATCAATCTCATTATAACATTGATGCAATGTTTTGGAACAACTAATCAGAGATTTAAATCAGTTTCTGAATAGAAGGGTTTGTCCATTTACACCTGAATTAGG
CTGCTCTTGGTTTCTTTTTCATGCTTCGACTGATTATGAAGTCATCGTCTGATTCATCATCGGAACTTTCGTCTTTCAAATTACGCTTGGTCGACTGTTTTGCCACAACT
TTGGAGCCCACTGTCATCGTCTTCTTATTTGAAGAAACTGGAGGGGATTGGACAGTTTTCTTGACAATGGTGGTCTTCGTGACGCTCTTTACAGCGGTCACAGTCTTCCC
TGGGGAGCTCAACTTTTGCAGTGGTGCCTTCTTCTGCTTCTTTTCAAAAACTTTCTTTGCTTCTTCTTTGGATAGTAAACCAGACTCCATCATCCTGCA
Protein sequenceShow/hide protein sequence
MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEP
LQMAERIFEFLADEALSFKRYCNEAQLQ