CuGenDBv2

Gene ID	Carg17285
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L32, chloroplastic
Genome location	Carg_Chr18:10753998..10756898
RNA-Seq Expression	Carg17285
Synteny	Carg17285
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

8.2e-72

97.81

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAMTKVLPHSSPI+GI+DRKDSAPPLVLPEFNHESDR+GINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

KAG7013127.1 hypothetical protein SDJN02_25883 [Cucurbita argyrosperma subsp. argyrosperma]

5.7e-73

100

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

2.0e-70

97.08

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAM  VLPHSSPITGII RKDSAPPLVLPEFNHESDR+GINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

4.5e-70

95.62

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAM KVLPHSSPI+GI+D KDSAPPLVLPEFNHESDR+GINNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

7.0e-71

97.08

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAMTKVLPHSSPI+GI+DRKDSAPPLVLPEFNHESDR+ INNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

1.1e-56

79.41

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRI+RA+EGQ GSM GLKAM   LPHSSPI+G++  KDS PPLVLPEFN E D +  NNCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSGR G+QDNSA
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSA

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

2.0e-55

80.88

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRI+RA+EGQTGSM GLKAM   LPHSS   G++  KDS PPLVLPEFN ESD + INNCSIVGFGFPSL FSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSA

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

6.4e-62

85.71

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAM  VLPH SP++GI+DRKDS PPLVLPEFNHESD + I NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCS---GRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCS   GRTGEQDNS R
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCS---GRTGEQDNSAR

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

9.8e-71

97.08

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAM  VLPHSSPITGII RKDSAPPLVLPEFNHESDR+GINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

2.2e-70

95.62

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Query:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK
        MALRILRAVEGQTGSMFGLKAM KVLPHSSPI+GI+D KDSAPPLVLPEFNHESDR+GINNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

SwissProt top hits

e value

%identity

Alignment

Q0BTE2 50S ribosomal protein L32

1.5e-04

45.28

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Query:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQD
        MAVPK+KTSP +RG+R   +AL        C +CG++K PH  C  G  G  D
Subjt:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQD

Q1GT88 50S ribosomal protein L32

4.1e-05

52.27

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Query:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRKTSP KRG+R    +LK +     C +CG++K PH  C
Subjt:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q2G5R9 50S ribosomal protein L32

1.5e-04

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Query:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRKTSP +RG+R    AL        C +CG++K PH  C
Subjt:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q2N923 50S ribosomal protein L32

6.9e-05

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Query:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRK SPH+RG R    +LK +     C +CG++K PH  C
Subjt:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q5FUN5 50S ribosomal protein L32

2.0e-04

47.73

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Query:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRKT+P +RG+R   +AL  +     C +CG++K PH  C
Subjt:  MAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

3.0e-35

55.81

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Query:  MALRI--LRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNG
        MALR+  L+    ++  +   ++++ V    SP+ G  DR  S PPLVLPEF  + ++ G+      GFG PS +F+GSMELMAVPK+K S HKRGIRNG
Subjt:  MALRI--LRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNG

Query:  PKALKPIPVIIRCKSCGKVKLPHFYCCSG
        PKALKP+PVIIRC+SCG+VKLPHF+CCSG
Subjt:  PKALKPIPVIIRCKSCGKVKLPHFYCCSG

AT1G69485.1 Ribosomal L32p protein family

4.9e-22

77.05

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Query:  MELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTG---EQDNS
        MELMAVPK+K S HKRGIRNGPKA KP PVIIRC+SCG+VKLPHFYCCSG      EQ NS
Subjt:  MELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTG---EQDNS

Sequences

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CDS sequence

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ATGGCGTTGAGGATTTTGAGGGCGGTCGAAGGTCAGACGGGTTCGATGTTTGGGTTGAAGGCGATGACTAAGGTTTTACCCCATTCTTCGCCGATAACTGGGATCATAGA
CCGTAAGGATTCCGCGCCGCCGCTTGTTCTGCCGGAGTTTAACCATGAATCTGATAGGGAGGGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCCAGTCTATCTT
TTTCCGGGTCGATGGAGCTCATGGCTGTTCCTAAGAGGAAGACTTCTCCACATAAAAGGGGCATAAGAAATGGCCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGG
TGCAAGAGTTGCGGTAAGGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGAAGAACAGGGGAGCAGGATAACTCAGCCAGATGA

mRNA sequence

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ATTTCCAAATTCCTAAAACCCCGTCGTCATCTTAGGCCGATTTGCACCGCCGGTATACTGAAAGCAGCACTGCCACTTGCTCGCAGCTATGGCGTTGAGGATTTTGAGGG
CGGTCGAAGGTCAGACGGGTTCGATGTTTGGGTTGAAGGCGATGACTAAGGTTTTACCCCATTCTTCGCCGATAACTGGGATCATAGACCGTAAGGATTCCGCGCCGCCG
CTTGTTCTGCCGGAGTTTAACCATGAATCTGATAGGGAGGGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCCAGTCTATCTTTTTCCGGGTCGATGGAGCTCAT
GGCTGTTCCTAAGAGGAAGACTTCTCCACATAAAAGGGGCATAAGAAATGGCCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAGAGTTGCGGTAAGGTCA
AGCTGCCTCACTTCTATTGTTGCAGTGGAAGAACAGGGGAGCAGGATAACTCAGCCAGATGAGCAATGCAGGGCAAAAAGGACGGACCGTAAGCGCATAAATCCCCAAAT
AATCTTTCCCATTCAAAGGGGGCAGCCATAGTTTCCTTTTCGAGTATTCTTCTTCATTAGGTTCTTTGAATTTTGCTTCTCTACTTCCCTTTCAAAATGACGCAGGTTGT
AAGATTTAACATACACCATTGATTAGCTTTTGAACACATCCTTGCTCTGTACTTAACCAGCAAACTTAAGTTCTACCATGTCTGAAATGCGACTCTTTTAGCCTTTGTTC
TTCTTCTTCCATAGATGATTTCAAAAAAAAATTTGCTATGGGTAAACGTTAGGATCTCTTAAAATTTTTTGTTGAATTTGTTGTTCTGCCTCAGAGACTTAATCGTGCAT
TTGTTGAGGTACAAAGTTGTATATGAGTAATGTCTTTAGCCCACCGAGATGTCTAATTCTTATACTATTTATAAGAGTCTCATTCGATGTAGCTTGGCATCCTCGCTTTG
GC

Protein sequence

Show/hide protein sequence

MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGINNCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIR
CKSCGKVKLPHFYCCSGRTGEQDNSAR

Carg17285 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome