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Carg17332 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17332
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr06:9287354..9289335
RNA-Seq ExpressionCarg17332
SyntenyCarg17332
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597532.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]1.9e-46100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL

KAG7028990.1 Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]1.9e-46100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL

XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]3.3e-43100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]3.1e-4198.91Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

XP_022973756.1 dynein light chain 1, cytoplasmic-like isoform X2 [Cucurbita maxima]5.9e-4098.89Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain6.6e-3783.7Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MN D+KR+NP+ LMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1G0U9 Dynein light chain1.6e-43100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1I9I2 Dynein light chain2.9e-4098.89Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF

A0A6J1IC60 Dynein light chain1.5e-4198.91Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1IQ69 Dynein light chain8.6e-3786.96Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MN +SKRSNP+PLMVKPESEDRK SS A   KKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHC++GRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic6.6e-1861.9Show/hide
Query:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q3MHR3 Dynein light chain 2, cytoplasmic1.5e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q78P75 Dynein light chain 2, cytoplasmic1.5e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q96FJ2 Dynein light chain 2, cytoplasmic1.5e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q9D0M5 Dynein light chain 2, cytoplasmic1.5e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 113.1e-0742.19Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCVIGRNFGSVF
        K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W CV+G NFG  F
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCVIGRNFGSVF

AT3G16120.1 Dynein light chain type 1 family protein1.6e-0640.62Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVF
        K  ++  DM   MQ +A+ IA  + +   V     +A  IKKEFD+R+G  W CV+G NFG  F
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVF

AT4G15930.1 Dynein light chain type 1 family protein1.3e-2466.67Show/hide
Query:  EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +DR+ S     ++ P GK+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEFDK+HG TWHC++GRNFGS
Subjt:  EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

AT4G27360.1 Dynein light chain type 1 family protein1.7e-0537.1Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNFGS
        K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W C++G +FGS
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNFGS

AT5G20110.1 Dynein light chain type 1 family protein1.1e-0749.23Show/hide
Query:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS-VFHS
        I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHC++G +FGS V HS
Subjt:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS-VFHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAA
GAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGT
TCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCGTCTTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACACGGACCAA
CGAAAACCTCCCTGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCG
GCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCC
GAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTGTGAATCTCTAGCTTCTTGGT
TAATTTTCCCTTTATCTCAGTCTGATGGATCAAATCGTCATGAATTTCTGTTGCTTTAGTCCCTTAGAAGAGATTTTGTTACCTCTAGTTCGATCATTAGCTTATTTCCC
CTACTGAAATGGAGATCTACCTTTTAATTCTGTTCTTTTTCGGGATTCAGACACCATTAGCCCGATTCTTCTGTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGCCTG
CATAGGCAGTTTTAGCCCAGTTGTGTTAAGTACATTGAAATTACATATATTCTTGCATCACTAGATTAGTGGCTCTATTGGAGGAACTCTTTATTGAATTTGCTAGCTAA
TTCTCAGCTACAGCAATCTAAAACAATCTCAATGGATTCTGCTACGGTGTCAACCAGTGGGTGGGGGCTCCTCCATGAAACTTGATGATGGGGCCATCTAACTTTGGGGT
ATAGGACCGTTTGGAACTATGCGAGTTGAATCTTAGGCTCAAGTGTTCTATAGGGACAAAGACGGATTTGTTTTGAATAGTACTTTTGGGTTCAAATCTTCCCATTGTTC
TTTTGGCACTTATAAACTAGCTGAATTCACTGTGATATTGTCTCTTGAGTCATTATGGTATCTGTAATCTATATGGTTCTGTTCTGTTTGCTCAATGAAAGGTAGGAATC
AAGATATATGTCTCATGTTTAATTGAAGCATAAAATGTTCAGTTCTTGTTACTTTAGGGATGCAAGGGACTGCTTTGATGAGATACAGGAACTGCAATCTCTTTTTTTCT
GTGTGCTGCTAGGGAAACAGACAATTCTTATAGGCAAAAGGATAAAAGCTAGTATAAGATTTAGAACATGCCATTCTAACGCTAAATACTTAAGCGTAATTTGGTATGTA
ACTTGTAAGTGGGCAGTGCTCCCTCTCTTCGTTTCCGTTACCTTATAGTGCCAGAAACGTTCCTTTATATGGCCAATCTATTCATCCCAAGCCTTGAAACATCCCGGTGG
TATTAGTGATCCATTTAGTTTTTTTCATTTTGGCTGAGCGAACTCAGTTGTTAGCAGTACACTCCTAGCTGTAAAAATTGCAAGCTCTTGTGGTTATTATGTTACTGTAG
TTCCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTCGGTCGTATGTCCATTTCTAGTAGAGATTATCCTCTTTGGG
CTTCCCTTCTAGGTTCTAAAATACATATGTTAGGAAAAGGTTTCTACGCTCTTATAAAAAATGTTTTGTTTCCCTTTCCAACTGACGTGGGATCTCACAATCCACCTCTC
ATGGGGGCCAGCGTCCTTGGTGGCACACTACCCGGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGCTAACAAATATTGTTCTTTTGAGCTTTCTCTTTT
GCGCTTTCCCTC
Protein sequenceShow/hide protein sequence
MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL