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Carg17344 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17344
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S21
Genome locationCarg_Chr06:9242461..9244894
RNA-Seq ExpressionCarg17344
SyntenyCarg17344
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4313157.1 unnamed protein product [Prunus armeniaca]2.2e-3055.1Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQE--KEMLLSITCSRLLSPIQTV-VKGIEKSMHDFFWEGV
        MQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG++RAQ    E+ +   CS     I +      + ++      G+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQE--KEMLLSITCSRLLSPIQTV-VKGIEKSMHDFFWEGV

Query:  YKGEGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEV
        Y G+ + F     V               GDADS LDRLW KKK EV
Subjt:  YKGEGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEV

KAG2398450.1 40S ribosomal protein [Vigna angularis]6.4e-3055.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEG+ITELYIPRKCSATNRLIT+KDHASVQINIGH+DENGIY GQFSTFALCGFIRAQ                    V  +  S+  FF       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
           HF+    V   +         ++GDADSALDRLW KKK EV QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

KAG7028978.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma]8.8e-80100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
        EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]9.9e-3155.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADSALDRLWHKKKVEVHQQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]2.2e-3055.1Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADSALDRLWHKKKVEVHQQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

TrEMBL top hitse value%identityAlignment
A0A4D8YQH4 Small subunit ribosomal protein S21e1.2e-2953.9Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEG+  +LYIPRKCSATNRLITSKDHASVQINIGH+DENG YTGQFSTFALCGFIRAQ      S+ C  +   I  V+    +   D         
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLR-------GDADSALDRLWHKKKVEVHQQ
                    + ++ G  DL  LR       GDADSALDRLW KKKVE  QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLR-------GDADSALDRLWHKKKVEVHQQ

A0A4D8YZ37 Small subunit ribosomal protein S21e2.8e-3151.92Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVV--KGIEKSMHDFFWEGVY
        MQNEEG+  +LYIPRKCSATNRLITSKDHASVQIN+GH+DE+G YTGQFSTFALCGFIRAQ   + +    + +L     +     ++K+        V+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVV--KGIEKSMHDFFWEGVY

Query:  KGEGAHFVRWVMVEKPLTLGGLDLENLR-------GDADSALDRLWHKKKVEVHQQ
            A+ V++ M  +  +    DL  LR       GDADSALDRLW KKKVE  QQ
Subjt:  KGEGAHFVRWVMVEKPLTLGGLDLENLR-------GDADSALDRLWHKKKVEVHQQ

A0A6J1GFE6 40S ribosomal protein S214.8e-3155.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADSALDRLWHKKKVEVHQQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

A0A6J1IJN4 40S ribosomal protein S211.1e-3055.1Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADSALDRLWHKKKVEVHQQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

A0A6J5XL46 Uncharacterized protein1.1e-3055.1Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQE--KEMLLSITCSRLLSPIQTV-VKGIEKSMHDFFWEGV
        MQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG++RAQ    E+ +   CS     I +      + ++      G+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQE--KEMLLSITCSRLLSPIQTV-VKGIEKSMHDFFWEGV

Query:  YKGEGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEV
        Y G+ + F     V               GDADS LDRLW KKK EV
Subjt:  YKGEGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEV

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S213.8e-2544.22Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADSALDRLW K+K EV QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

Q3E902 40S ribosomal protein S21-21.4e-2747.26Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ
                                  GDADS +DRLW KKKVE  Q
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ

Q41852 40S ribosomal protein S214.2e-2443.15Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ
                                  GDADS+LDRLW KKK E+ Q
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ

Q9M337 40S ribosomal protein S21-11.5e-2644.9Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADS +DRLW KKKVE  QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

Q9SMI2 40S ribosomal protein S213.3e-2164.38Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQ-EKEMLLSITC
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+  E +  L+  C
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQ-EKEMLLSITC

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e1.1e-2744.9Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADS +DRLW KKKVE  QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e1.1e-2744.9Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ
                                  GDADS +DRLW KKKVE  QQ
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ

AT5G27700.1 Ribosomal protein S21e9.9e-2947.26Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ                                       
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKG

Query:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ
                                  GDADS +DRLW KKKVE  Q
Subjt:  EGAHFVRWVMVEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAAATCACGGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGG
GCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGAAAAGGAGATGCTATTGAGCATAACTTGTTCGAGAT
TGTTATCGCCTATTCAGACGGTCGTTAAAGGTATTGAGAAGTCGATGCATGATTTCTTTTGGGAAGGGGTTTACAAGGGGGAAGGAGCACACTTTGTGAGATGGGTGATG
GTGGAAAAGCCGTTGACTCTTGGTGGGTTAGATCTTGAGAATCTCAGGGGAGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACA
ATAG
mRNA sequenceShow/hide mRNA sequence
TCTTCAGAACGCCTTTTTCTTCCTCTCGGATAGCTCGCTTTCCTCTTTGCGCTGCGGTTTTTGATTTCTAAAGAATTAGTTGATTCAAGATGCAGAACGAAGAGGGAAAA
ATCACGGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGGGCATTTGGATGAGAATGGCAT
CTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGAAAAGGAGATGCTATTGAGCATAACTTGTTCGAGATTGTTATCGCCTATTCAGACGG
TCGTTAAAGGTATTGAGAAGTCGATGCATGATTTCTTTTGGGAAGGGGTTTACAAGGGGGAAGGAGCACACTTTGTGAGATGGGTGATGGTGGAAAAGCCGTTGACTCTT
GGTGGGTTAGATCTTGAGAATCTCAGGGGAGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAGATGATTGTGCTGGTCTG
GTTCATCTCTACAACAATGTTTTCAAGGATAGAGATGCACTTTTAAAAAATTTTGAACCTATTAAACTCGTTAGTTTCTTTCGACAATTTAAACTCGTTAGTTTCTTTCA
ATGCAAACTTGACTGCACCCGAGTCGGTACAAGCTTTGGAGGGTGAAAAGGGGACAAAACTAAGGTGAATGAGATATGTTGGATTTCATTTTCCCTTGAAAGGAATTACC
AAAGTGAGCTTCTATATGGCCTCATGTTTTGTTGATATGATAGGATGCCTTTAAGCTTCCGATAGGTTGTCCTTGGCGATGTTGTTAATAATGAGAAAAGAAAACGAGAA
CTAGTTACACATTTTCCATGGTAGCTCATTTGTTTTTCTAGTGTCTACTTAGGTTAGCATCTAAGAGTTCTTATTGTGTCTAGTTTTTTCAGAATGAAACGCAAGGGATT
TGTTAGTCGAAGGGTTTTGTTTGCATCTT
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQEKEMLLSITCSRLLSPIQTVVKGIEKSMHDFFWEGVYKGEGAHFVRWVM
VEKPLTLGGLDLENLRGDADSALDRLWHKKKVEVHQQ