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Carg17366 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17366
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCASP-like protein
Genome locationCarg_Chr06:9093530..9094506
RNA-Seq ExpressionCarg17366
SyntenyCarg17366
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006459 - Casparian strip membrane protein
IPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597497.1 CASP-like protein 1E2, partial [Cucurbita argyrosperma subsp. sororia]8.4e-4999.15Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNI ALLITILDL
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSSAGAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

KAG7028956.1 CASP-like protein 1E2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-49100Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSSAGAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

XP_022945099.1 CASP-like protein 1E2 isoform X2 [Cucurbita moschata]3.8e-4999.15Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVP+SISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSSAGAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

XP_022975464.1 CASP-like protein 1E2 [Cucurbita maxima]1.8e-4694.07Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKE KVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASL+GLL+LTISLANKNRS++LALLITILD+
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSS GAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

XP_023540313.1 CASP-like protein 1E2 [Cucurbita pepo subsp. pepo]1.2e-4797.46Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGF LTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLL+L ISLANKNRSNILALLITILDL
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSSAGAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

TrEMBL top hitse value%identityAlignment
A0A5A7U2H8 CASP-like protein1.3e-3171.43Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRS-NILALLITILD
        MSG GKLE +LRVLGF+L+LVAAIVV +DKETKVVP +IS NLP F +VVVAKW YLSAFVY FA NVIASLYGLL+L ++L+NKN S N+L LL+ +LD
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRS-NILALLITILD

Query:  LVMVVLLSSSAGAAIAIGI
         V V LLSS AGAA+AIG+
Subjt:  LVMVVLLSSSAGAAIAIGI

A0A6J1FZX5 CASP-like protein8.5e-4790Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTF------------DVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRS
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVP+SISPNLPTF            DVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRS
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTF------------DVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRS

Query:  NILALLITILDLVMVVLLSSSAGAAIAIGI
        NILALLITILDLVMVVLLSSSAGAAIAIGI
Subjt:  NILALLITILDLVMVVLLSSSAGAAIAIGI

A0A6J1G003 CASP-like protein1.8e-4999.15Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVP+SISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSSAGAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

A0A6J1I8B7 CASP-like protein1.5e-4694.07Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKE KVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLL+LTISLANKNRS++LAL ITILD+
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSS GAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

A0A6J1IKK8 CASP-like protein8.5e-4794.07Show/hide
Query:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKE KVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASL+GLL+LTISLANKNRS++LALLITILD+
Subjt:  MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMVVLLSSS GAAIAIGI
Subjt:  VMVVLLSSSAGAAIAIGI

SwissProt top hitse value%identityAlignment
A7NW78 CASP-like protein 1E25.0e-2053.39Show/hide
Query:  GGKL---EGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL
        GGKL   + VLRV+   LTLVAA+++ +DK+TKVV   + P LP  DV V AKW YLSAFVY   +N IA  Y  L+L +S+ N   +  L L IT++DL
Subjt:  GGKL---EGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
        VMV LL SS GAA AIG+
Subjt:  VMVVLLSSSAGAAIAIGI

A7PTY8 CASP-like protein 1E14.9e-1543.22Show/hide
Query:  SGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLT-ISLANKNRSNILALLITILDL
        S G   E VLR+LG +LTL+AA+V  +DK+TK++P ++   LP+  V V AKW  +SAFVYL  +N IA  Y  ++L  +++  +       L + +LDL
Subjt:  SGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLT-ISLANKNRSNILALLITILDL

Query:  VMVVLLSSSAGAAIAIGI
         MV LL S+ GAA A+G+
Subjt:  VMVVLLSSSAGAAIAIGI

B9HMP6 CASP-like protein 1E11.8e-1750Show/hide
Query:  GGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVM
        G    + +LRVL  VLTL AAIV+ +DK+TKVVP  I   LP  ++ V AKWHYLSAF Y  A+N IA  Y  L+L ++++ K    I++++I +LDL+M
Subjt:  GGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVM

Query:  VVLLSSSAGAAIAIGI
        V +L SS GAA+AIG+
Subjt:  VVLLSSSAGAAIAIGI

C6SZP8 CASP-like protein 1E23.3e-1950.46Show/hide
Query:  VLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVMVVLLSSS
        +LR+L F +TLVAAIV+ +DK+TKVVP  +S +LP  DV + AKWH +SA VY    N IA  Y +L+L ++L N+ +S  L  LI +LD  MV LL S 
Subjt:  VLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVMVVLLSSS

Query:  AGAAIAIGI
         GAA A+G+
Subjt:  AGAAIAIGI

C6TBD0 CASP-like protein 1E12.1e-1847.37Show/hide
Query:  GKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVMVV
        G  + +LR+L F +TLVAAIV+ +DK+TK+VP  +S + P  +V + AKWH +SAFVY    N IA  Y  ++L ++L N+ +S  L  LI +LD  MV 
Subjt:  GKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVMVV

Query:  LLSSSAGAAIAIGI
        LL S  GAA A+GI
Subjt:  LLSSSAGAAIAIGI

Arabidopsis top hitse value%identityAlignment
AT4G15620.1 Uncharacterised protein family (UPF0497)1.6e-1343.36Show/hide
Query:  LEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITIL-DLVMVVL
        +E  +RVL  +LT+ AA V+ + K+TKVV   + P LP  D+   AK  YLSAFVY  + N IA  Y  +++ I + ++ R +   L++ +L DLVMV L
Subjt:  LEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITIL-DLVMVVL

Query:  LSSSAGAAIAIGI
        L S  GAA AIG+
Subjt:  LSSSAGAAIAIGI

AT4G15630.1 Uncharacterised protein family (UPF0497)1.7e-1549.58Show/hide
Query:  SGGGK-LEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANK-NRSNILALLITILD
        SG  K LE  +RVL  VLT+VAA V+ + K+TKVVP  + P LP  +V   AK  YLSAFVY  +AN IA  Y  +++ I + +K  RS  L + + I D
Subjt:  SGGGK-LEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANK-NRSNILALLITILD

Query:  LVMVVLLSSSAGAAIAIGI
        L+MV LL SS GAA AIG+
Subjt:  LVMVVLLSSSAGAAIAIGI

AT4G20390.1 Uncharacterised protein family (UPF0497)4.2e-0633.33Show/hide
Query:  LRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANK--NRSNILALLITILDLVMVVLLSS
        LR+  F+ TL AAIV+ L+KETK +  +    +P     + AK+ +  AFV+   ANV+ S + LL + + + ++      +  L I ILD++   L+S+
Subjt:  LRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANK--NRSNILALLITILDLVMVVLLSS

Query:  SAGAAIAI
        +A AA+ +
Subjt:  SAGAAIAI

AT5G44550.1 Uncharacterised protein family (UPF0497)1.0e-0435.24Show/hide
Query:  LRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISL--ANKNRSNILALLITILDLVMVVLLSS
        LR+L F  TL AAIV+ L+KETK        N P       AK+ +  AFV+   AN + S + LL + + +       +    L + ILD++ V L+S+
Subjt:  LRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISL--ANKNRSNILALLITILDLVMVVLLSS

Query:  SAGAA
        +A AA
Subjt:  SAGAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGTGGTGGGAAGTTGGAAGGGGTTCTTAGGGTTTTGGGGTTTGTGTTAACTTTGGTGGCAGCCATTGTTGTGAGGCTTGACAAAGAAACAAAAGTGGTTCCTTT
TTCTATCTCCCCGAACCTTCCTACTTTCGACGTTGTTGTGGTCGCTAAGTGGCATTACTTGTCTGCTTTCGTGTACCTTTTTGCGGCCAATGTAATTGCAAGCTTATATG
GACTACTGACGTTGACTATTTCATTAGCAAACAAGAACCGAAGCAATATATTAGCTTTGCTGATCACCATTCTCGACCTTGTGATGGTGGTGCTGCTCTCTTCCAGCGCC
GGGGCCGCCATAGCCATTGGAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGTGGTGGGAAGTTGGAAGGGGTTCTTAGGGTTTTGGGGTTTGTGTTAACTTTGGTGGCAGCCATTGTTGTGAGGCTTGACAAAGAAACAAAAGTGGTTCCTTT
TTCTATCTCCCCGAACCTTCCTACTTTCGACGTTGTTGTGGTCGCTAAGTGGCATTACTTGTCTGCTTTCGTGTACCTTTTTGCGGCCAATGTAATTGCAAGCTTATATG
GACTACTGACGTTGACTATTTCATTAGCAAACAAGAACCGAAGCAATATATTAGCTTTGCTGATCACCATTCTCGACCTTGTGATGGTGGTGCTGCTCTCTTCCAGCGCC
GGGGCCGCCATAGCCATTGGAATTTAA
Protein sequenceShow/hide protein sequence
MSGGGKLEGVLRVLGFVLTLVAAIVVRLDKETKVVPFSISPNLPTFDVVVVAKWHYLSAFVYLFAANVIASLYGLLTLTISLANKNRSNILALLITILDLVMVVLLSSSA
GAAIAIGI