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Carg17422 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17422
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCarg_Chr06:8823270..8823833
RNA-Seq ExpressionCarg17422
SyntenyCarg17422
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597442.1 hypothetical protein SDJN03_10622, partial [Cucurbita argyrosperma subsp. sororia]9.0e-4083.02Show/hide
Query:  MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLL
        MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPL V +      ++  LL
Subjt:  MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLL

Query:  SFNTEI
        S++ ++
Subjt:  SFNTEI

KAG7028903.1 hypothetical protein SDJN02_10085, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-78100Show/hide
Query:  MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLL
        MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLL
Subjt:  MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLL

Query:  SFNTEIEDGSIEQDLCSSEKLNNLPIGLKRNPPRIIVINVQNWNFVNG
        SFNTEIEDGSIEQDLCSSEKLNNLPIGLKRNPPRIIVINVQNWNFVNG
Subjt:  SFNTEIEDGSIEQDLCSSEKLNNLPIGLKRNPPRIIVINVQNWNFVNG

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]1.1e-2664.04Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGS+SSL+MAISSVFSRWDGLQMAI+++WGG DSHQK LNL SDVFSWFS SK                            PLYVEDLENLLHE  LLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQDL
        FNTEIEDGSIEQ +
Subjt:  FNTEIEDGSIEQDL

XP_022949537.1 uncharacterized protein LOC111452853 [Cucurbita moschata]1.1e-5089.26Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNS MLPSIAAPLYVEDLENL HE HLLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQDLCSSEKLN
        FNTE EDGSIEQ    +E L+
Subjt:  FNTEIEDGSIEQDLCSSEKLN

XP_022973690.1 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 [Cucurbita maxima]4.5e-3170.54Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGSISSL+MAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVF+WFSQSKR                          +PLYV+DLENLLHE HLLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQ
        FNTEIEDGSIEQ
Subjt:  FNTEIEDGSIEQ

TrEMBL top hitse value%identityAlignment
A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X27.2e-2765.18Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGS+SSL+MAISSVFSRWDGLQMAI+++WGG DSHQK LNL SDVFSWFS SK                            PLYVEDLENLLHE  LLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQ
        FNTEIEDGSIEQ
Subjt:  FNTEIEDGSIEQ

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X15.5e-2764.04Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGS+SSL+MAISSVFSRWDGLQMAI+++WGG DSHQK LNL SDVFSWFS SK                            PLYVEDLENLLHE  LLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQDL
        FNTEIEDGSIEQ +
Subjt:  FNTEIEDGSIEQDL

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X27.2e-2765.18Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGS+SSL+MAISSVFSRWDGLQMAI+++WGG DSHQK LNL SDVFSWFS SK                            PLYVEDLENLLHE  LLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQ
        FNTEIEDGSIEQ
Subjt:  FNTEIEDGSIEQ

A0A6J1GCB9 uncharacterized protein LOC1114528535.5e-5189.26Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNS MLPSIAAPLYVEDLENL HE HLLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQDLCSSEKLN
        FNTE EDGSIEQ    +E L+
Subjt:  FNTEIEDGSIEQDLCSSEKLN

A0A6J1IC01 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR22.2e-3170.54Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS
        AGSISSL+MAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVF+WFSQSKR                          +PLYV+DLENLLHE HLLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLS

Query:  FNTEIEDGSIEQ
        FNTEIEDGSIEQ
Subjt:  FNTEIEDGSIEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region2.6e-1342.59Show/hide
Query:  SSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLSFNTE
        S L+  I  + SRW GLQMA+ ++WGG DS +K   LA ++F   SQS                              + VE++ENLLHE  LLLSFNTE
Subjt:  SSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLSFNTE

Query:  IEDGSIEQ
        IEDGSIE+
Subjt:  IEDGSIEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATCACAAATGGGGCGGTGGCGATTCTCACCA
GAAACCGCTGAATCTCGCCTCAGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCTTCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATT
CCGTTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAACAACACCTGCTTCTCTCCTTCAACACCGAGATCGAAGATGGTAGC
ATCGAACAGGATCTATGTTCATCAGAGAAATTAAACAATCTGCCCATTGGCCTGAAGCGAAATCCTCCGAGAATTATTGTCATCAATGTTCAAAATTGGAACTTCGTAAA
TGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATCACAAATGGGGCGGTGGCGATTCTCACCA
GAAACCGCTGAATCTCGCCTCAGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCTTCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATT
CCGTTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAACAACACCTGCTTCTCTCCTTCAACACCGAGATCGAAGATGGTAGC
ATCGAACAGGATCTATGTTCATCAGAGAAATTAAACAATCTGCCCATTGGCCTGAAGCGAAATCCTCCGAGAATTATTGTCATCAATGTTCAAAATTGGAACTTCGTAAA
TGGATGA
Protein sequenceShow/hide protein sequence
MAGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHEQHLLLSFNTEIEDGS
IEQDLCSSEKLNNLPIGLKRNPPRIIVINVQNWNFVNG