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Carg17456 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17456
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionInterleukin-2 receptor subunit beta like
Genome locationCarg_Chr12:11027035..11027520
RNA-Seq ExpressionCarg17456
SyntenyCarg17456
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586352.1 hypothetical protein SDJN03_19085, partial [Cucurbita argyrosperma subsp. sororia]6.5e-84100Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_022938304.1 uncharacterized protein LOC111444439 [Cucurbita moschata]1.4e-8399.38Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_022965990.1 uncharacterized protein LOC111465710 [Cucurbita maxima]2.3e-8196.89Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VP+PLTRCSSAKDKSRSRESPESKTDWRPHFISRLG HSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKS PSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]1.6e-8298.14Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VPSPLTRCSSAKDKSRSRESPESK DWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]1.0e-6080.25Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNG-HHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHS
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNG HHH   H H RRMS SSDG+ P PL RCSSAKDKSRSRESPE K D RPHFISRLGRH RRH 
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNG-HHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHS

Query:  SASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        SAS DF YDALSYALNFDEGYDEGHVDD FPLRNFSSRLPASP KS+PSS+  SREM TA+S
Subjt:  SASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

TrEMBL top hitse value%identityAlignment
A0A0A0LL60 Uncharacterized protein8.6e-5876.97Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGE-VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSR
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL     H H+R MS SSDGE  P PL RCSSAKDKSRSRE  + K D  P FISRLGRH R
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGE-VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSR

Query:  RHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        RH SAS DFHYDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PS+T  SREM TA+S
Subjt:  RHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A1S3CDF1 uncharacterized protein LOC1034996078.6e-5874.85Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH
        MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSDG+ P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH

Query:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
         RRH SAS DF YDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PSS+  SREM TA+S
Subjt:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A5D3BFQ4 Uncharacterized protein3.9e-5875.45Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH
        MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSDG+ P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH

Query:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
         RRH SAS DF YDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKSAPSS+  SREM TA+S
Subjt:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A6J1FDP2 uncharacterized protein LOC1114444397.0e-8499.38Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A6J1HQB7 uncharacterized protein LOC1114657101.1e-8196.89Show/hide
Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VP+PLTRCSSAKDKSRSRESPESKTDWRPHFISRLG HSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKS PSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)2.6e-0650.91Show/hide
Query:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS
        SS    F YD LSY+LNFD+G   GH DD FP R++S R  A    S P ST+ S
Subjt:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS

AT5G14890.1 NHL domain-containing protein1.3e-0549.02Show/hide
Query:  VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS
        V F YD+ SY+LNFD+G   GH +D FP R++S R  A    S P ST+ S
Subjt:  VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS

AT5G35090.1 unknown protein7.0e-1235.76Show/hide
Query:  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRL----------GRHSRRH
        E  +  SL+ K+KS  C++ C R   N HHH            +++    SP       K    +R   +S    +   I R+          G+H RRH
Subjt:  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRL----------GRHSRRH

Query:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS
        ++   DFHYD  SYALNFD+G ++ ++ D FPLRNFS+RLP SPP SA ++
Subjt:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCA
CCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGAAGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTC
GCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTGGATTTTCACTACGATGCGCTT
AGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGCGCC
GTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCA
CCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGAAGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTC
GCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTGGATTTTCACTACGATGCGCTT
AGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGCGCC
GTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA
Protein sequenceShow/hide protein sequence
MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDAL
SYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS