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Carg17457 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17457
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger, SWIM-type
Genome locationCarg_Chr12:11030041..11030367
RNA-Seq ExpressionCarg17457
SyntenyCarg17457
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586353.1 hypothetical protein SDJN03_19086, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5399.07Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEG LTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

KAG7021199.1 hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-55100Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

XP_022938303.1 uncharacterized protein LOC111444438 [Cucurbita moschata]6.1e-5499.07Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

XP_022965412.1 uncharacterized protein LOC111465326 [Cucurbita maxima]2.1e-4691.67Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRSWSEGCLTLA A    SPSSSPVVGK SQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQF RS
Subjt:  APVQFNRS

XP_023536961.1 uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo]9.8e-5296.33Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALS-DDDDD
        MAADGVLRPVYEACIAGCDSE+HRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGK SQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALS-DDDDD

Query:  DAPVQFNRS
        DAPVQF RS
Subjt:  DAPVQFNRS

TrEMBL top hitse value%identityAlignment
A0A0A0LI78 Uncharacterized protein4.9e-4180.37Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADG+LRP+YEACI GCDSEIHRRPYHRNCGCALH+S RQ  HC HSK KS+SYPIRRSWSEGCL+L  AS SSSPSSSPVVGK SQPGA LS+DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNR
        +P+ F R
Subjt:  APVQFNR

A0A1S4E0F4 uncharacterized protein LOC1034996141.1e-4384.11Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALH+SRRQ  HC HSK KS+SYPIRRSWSEGCL+LA AS SSSPS+SPVVGK SQPGAALS+DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNR
        AP+ F R
Subjt:  APVQFNR

A0A6J1FII0 uncharacterized protein LOC1114444383.0e-5499.07Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

A0A6J1HKA0 uncharacterized protein LOC1114653261.0e-4691.67Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRSWSEGCLTLA A    SPSSSPVVGK SQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQF RS
Subjt:  APVQFNRS

A0A6J1KE46 uncharacterized protein LOC1114935295.8e-4281.48Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD
        MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALH+SRRQ   C HSK KS+ YPIRRSWSEGCL LA AS SSSPSSSPVVGK SQPG ALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD

Query:  APVQFNRS
        AP+Q  R+
Subjt:  APVQFNRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46490.1 unknown protein1.9e-1643.48Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHE----------SRRQLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKFSQP
        MAADG+ R ++E CI+G DS I RRPYH+NCGCALH+           RR  S   H   +S+S+PIRRSWSEG  + +   S SSS S+   +   S  
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHE----------SRRQLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKFSQP

Query:  GAALSDDDDDDAPVQ
            SD   D+A  +
Subjt:  GAALSDDDDDDAPVQ

AT5G35110.1 unknown protein4.9e-1746.6Show/hide
Query:  DGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRR---QLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSP-----SSSPVVGKFSQPGAALS
        DG+ R ++E CI+ CDS I RRPYH+NCGCALHE  R     + C H + + V +PI+RSWSEG  L L  AS SSS      SSS  +   +   + +S
Subjt:  DGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRR---QLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSP-----SSSPVVGKFSQPGAALS

Query:  DDD
        D D
Subjt:  DDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGATTCCGAAATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGA
ATCCCGCCGTCAACTTTCTCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTGCTTGACGCTCGCCTTCGCCTCTCCTT
CCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTTCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGATTCCGAAATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGA
ATCCCGCCGTCAACTTTCTCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTGCTTGACGCTCGCCTTCGCCTCTCCTT
CCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTTCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA
Protein sequenceShow/hide protein sequence
MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS