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Carg17508 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17508
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear pore complex protein NUP205
Genome locationCarg_Chr12:11330210..11330473
RNA-Seq ExpressionCarg17508
SyntenyCarg17508
Gene Ontology termsGO:0005643 - nuclear pore (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021250.1 Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-24100Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
XP_022938218.1 nuclear pore complex protein NUP205 isoform X1 [Cucurbita moschata]4.8e-24100Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
XP_022938219.1 nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata]3.4e-2298.33Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAIAYHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
XP_022965531.1 nuclear pore complex protein NUP205 isoform X1 [Cucurbita maxima]2.4e-2396.67Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDS+VIPDGNANIKAI+YHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
XP_023537591.1 nuclear pore complex protein NUP205 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-2398.33Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAI+YHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
TrEMBL top hitse value%identityAlignment
A0A6J1CPX3 nuclear pore complex protein NUP2058.5e-1980Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCK+VGNK++MITLLLPLAEYVLNVMLIHFQDS+VIPDGNAN+KAI+YH E  S  EI+S
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
A0A6J1FDF5 nuclear pore complex protein NUP205 isoform X21.7e-2298.33Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAIAYHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
A0A6J1FI96 nuclear pore complex protein NUP205 isoform X12.3e-24100Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
A0A6J1HKK4 nuclear pore complex protein NUP205 isoform X23.7e-2296.67Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAI+YHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
A0A6J1HLX9 nuclear pore complex protein NUP205 isoform X11.1e-2396.67Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
        MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDS+VIPDGNANIKAI+YHGELESGHEISS
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
SwissProt top hitse value%identityAlignment
F4KBW6 Nuclear pore complex protein NUP2051.2e-0668.57Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV
        MC+IVGN+ ++ITLLL LAE+VLN++LIH QD SV
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV
Arabidopsis top hitse value%identityAlignment
AT5G51200.1 Protein of unknown function (DUF3414)8.7e-0868.57Show/hide
Query:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV
        MC+IVGN+ ++ITLLL LAE+VLN++LIH QD SV
Subjt:  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAAGATTGTTGGAAATAAAAGTGAGATGATTACATTGCTACTCCCTCTGGCTGAGTATGTGTTAAATGTGATGCTTATTCATTTTCAAGACAGCAGTGTTATTCC
TGATGGGAATGCAAATATTAAAGCAATTGCATATCATGGGGAGTTGGAGTCAGGACATGAAATAAGTTCA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAAGATTGTTGGAAATAAAAGTGAGATGATTACATTGCTACTCCCTCTGGCTGAGTATGTGTTAAATGTGATGCTTATTCATTTTCAAGACAGCAGTGTTATTCC
TGATGGGAATGCAAATATTAAAGCAATTGCATATCATGGGGAGTTGGAGTCAGGACATGAAATAAGTTCA
Protein sequenceShow/hide protein sequence
MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS