; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17512 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17512
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibonucloprotein
Genome locationCarg_Chr12:11349488..11351659
RNA-Seq ExpressionCarg17512
SyntenyCarg17512
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002415 - H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004037 - Ribosomal protein L7Ae conserved site
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR018492 - Ribosomal protein L7Ae/L8/Nhp2 family
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021254.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma]3.9e-63100Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_004139318.1 NHP2-like protein 1 [Cucumis sativus]1.1e-6098.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_020206464.1 NHP2-like protein 1 [Cajanus cajan]1.8e-6097.69Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_022142972.1 NHP2-like protein 1 [Momordica charantia]2.4e-6097.69Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_027332262.1 NHP2-like protein 1 isoform X2 [Abrus precatorius]2.4e-6096.92Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANE  ATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

TrEMBL top hitse value%identityAlignment
A0A0A0LF58 Ribonucloprotein5.1e-6198.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A1S3C622 Ribonucloprotein5.1e-6198.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A444WXD4 Ribonucloprotein5.1e-6198.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1G368 Ribonucloprotein5.1e-6198.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1HQD3 Ribonucloprotein5.1e-6198.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE  ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

SwissProt top hitse value%identityAlignment
P55769 NHP2-like protein 13.0e-5078.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANE  ATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q3B8S0 NHP2-like protein 13.0e-5078.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANE  ATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q4R5C6 NHP2-like protein 13.0e-5078.46Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANE  ATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q5XH16 NHP2-like protein 17.2e-5280.77Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANE  ATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT  EGSQLK QIQ ++ AIE+LL+
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q6P8E9 NHP2-like protein 17.2e-5280.77Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANE  ATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIAC+VT  EGSQLK QIQ L+ +IE+LL+
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.8e-5990.77Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE  ATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.3e-5163.78Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK----------------------
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE  ATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDK                      
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK----------------------

Query:  ---------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
                                         NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  ---------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.9e-6091.54Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANE  ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-6092.31Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
        MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE  ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP

Query:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        VIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  VIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.1e-5875.62Show/hide
Query:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE------------------------------VSATKTLNRGISEFVVMAADTEPLEILLH
        MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                              +SATKTLNRGISEFVVMAAD EPLEILLH
Subjt:  MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE------------------------------VSATKTLNRGISEFVVMAADTEPLEILLH

Query:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCTGATGCGCAGCTTACTATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAA
GGGCGCGAATGAAGTTTCAGCTACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTCCCCTTGT
TGGCGGAAGATAAGAATGTGCCGTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGCGGAGTCACGAGACCTGTAATAGCGTGTTCTGTAACAACAAACGAA
GGGAGCCAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA
mRNA sequenceShow/hide mRNA sequence
AGAATTTACCGGTAGCTCTTAAACCCTAATTCCTTTTCTTCAACATCTGCTGTGTTAAAACCCTACCGTTCTTCTTCGATCTAAAATGACAGGAGAAGCGGTGAATCCCA
AAGCCTATCCTTTGGCTGATGCGCAGCTTACTATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGCGCGAATGAAGTTTCAGCTACT
AAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTCCCCTTGTTGGCGGAAGATAAGAATGTGCCGTA
TGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGCGGAGTCACGAGACCTGTAATAGCGTGTTCTGTAACAACAAACGAAGGGAGCCAATTGAAATCCCAGATAC
AGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA
Protein sequenceShow/hide protein sequence
MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEVSATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNE
GSQLKSQIQQLKDAIEKLLI