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Carg17569 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17569
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionvesicle-associated protein 2-2-like
Genome locationCarg_Chr12:10444249..10445327
RNA-Seq ExpressionCarg17569
SyntenyCarg17569
Gene Ontology termsGO:0061817 - endoplasmic reticulum-plasma membrane tethering (biological process)
GO:0090158 - endoplasmic reticulum membrane organization (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000535 - Major sperm protein (MSP) domain
IPR008962 - PapD-like superfamily
IPR013783 - Immunoglobulin-like fold
IPR016763 - Vesicle-associated membrane-protein-associated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586284.1 putative manganese-transporting ATPase PDR2, partial [Cucurbita argyrosperma subsp. sororia]8.1e-1788Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
KAG7021131.1 Vesicle-associated protein 2-2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-41100Show/hide
Query:  MEDPLVLNVFVLLAVRNFHSGRVCFERSVLELARVEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSG
        MEDPLVLNVFVLLAVRNFHSGRVCFERSVLELARVEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSG
Subjt:  MEDPLVLNVFVLLAVRNFHSGRVCFERSVLELARVEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSG
KAG7021168.1 Vesicle-associated protein 2-2 [Cucurbita argyrosperma subsp. argyrosperma]8.1e-1788Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
XP_022937988.1 vesicle-associated protein 2-2-like [Cucurbita moschata]8.1e-1788Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
XP_023538184.1 vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo]8.1e-1788Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
TrEMBL top hitse value%identityAlignment
A0A0A0LIH5 MSP domain-containing protein8.2e-1576Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQL+NNT+HHVAFK+KTTSPKKYCVRPNVGI+ PKS CEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
A0A5D3D4C3 Vesicle-associated protein 2-2 isoform X18.2e-1576Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQL+NNT+HHVAFK+KTTSPKKYCVRPNVGI+ PKS CEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
A0A6J1CPY8 vesicle-associated protein 2-2-like6.3e-1576Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+++   CTVQLANNT+HHVAFK+KTTSPKKYCVRPNVGI+ PKS C+FS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
A0A6J1FHK4 vesicle-associated protein 2-2-like3.9e-1788Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
A0A6J1HL55 vesicle-associated protein 2-2-like5.1e-1786Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        E+ +   CTVQLANNTNHHVAFK+KTTSPKKYCVRPNVGIVFPKSACEFS
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
SwissProt top hitse value%identityAlignment
B9DHD7 Vesicle-associated protein 2-27.9e-1566.67Show/hide
Query:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        V++++   C VQL N T+H+VAFK+KTTSPKKYCVRPNVG+V PKS CEF+
Subjt:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
Q8VZ95 Vesicle-associated protein 1-16.9e-1156.25Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        E+++   C++ L N T+++VAFK+KTT+PKKYCVRPN G+V P+S CE
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
Q9LVU1 Vesicle-associated protein 2-17.6e-1055.32Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSAC
        E+E+  YC +++AN T ++VAFK+KTTSPKKY VRPN G++ P  +C
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSAC
Q9SHC8 Vesicle-associated protein 1-27.6e-1054.17Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        E+++   C++ L N T+++VAFK+KTT+PKKYCVRPN G+V P+S+ E
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
Q9SYC9 Vesicle-associated protein 1-42.2e-0948.98Show/hide
Query:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        +E+ +   C++ L N T+++VAFK +TT PK YCV+P+VG+V P+S+CE
Subjt:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
Arabidopsis top hitse value%identityAlignment
AT1G08820.1 vamp/synaptobrevin-associated protein 27-25.6e-1666.67Show/hide
Query:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        V++++   C VQL N T+H+VAFK+KTTSPKKYCVRPNVG+V PKS CEF+
Subjt:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
AT1G08820.2 vamp/synaptobrevin-associated protein 27-25.6e-1666.67Show/hide
Query:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
        V++++   C VQL N T+H+VAFK+KTTSPKKYCVRPNVG+V PKS CEF+
Subjt:  VEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFS
AT3G60600.1 vesicle associated protein4.9e-1256.25Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        E+++   C++ L N T+++VAFK+KTT+PKKYCVRPN G+V P+S CE
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
AT3G60600.2 vesicle associated protein4.9e-1256.25Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        E+++   C++ L N T+++VAFK+KTT+PKKYCVRPN G+V P+S CE
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
AT3G60600.3 vesicle associated protein4.9e-1256.25Show/hide
Query:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE
        E+++   C++ L N T+++VAFK+KTT+PKKYCVRPN G+V P+S CE
Subjt:  EIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATCCGCTTGTTTTGAATGTTTTTGTGTTGCTTGCTGTTCGAAATTTCCATTCGGGACGAGTTTGTTTTGAACGATCTGTTTTGGAATTAGCTCGCGTTGAAAT
TGAGGAAACAAAGTACTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTG
GGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATCCGCTTGTTTTGAATGTTTTTGTGTTGCTTGCTGTTCGAAATTTCCATTCGGGACGAGTTTGTTTTGAACGATCTGTTTTGGAATTAGCTCGCGTTGAAAT
TGAGGAAACAAAGTACTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTG
GGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGT
Protein sequenceShow/hide protein sequence
MEDPLVLNVFVLLAVRNFHSGRVCFERSVLELARVEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSG