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Carg17581 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17581
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S24
Genome locationCarg_Chr12:10551692..10553393
RNA-Seq ExpressionCarg17581
SyntenyCarg17581
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139219.1 40S ribosomal protein S24-1 [Cucumis sativus]1.2e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_008455742.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]2.6e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022143165.1 40S ribosomal protein S24-1 [Momordica charantia]2.0e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022937688.1 40S ribosomal protein S24-1-like [Cucurbita moschata]4.0e-66100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022999263.1 40S ribosomal protein S24-1-like [Cucurbita maxima]2.0e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASD+AKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A0A0LFK1 40S ribosomal protein S245.6e-6699.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1CN14 40S ribosomal protein S249.5e-6699.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1FGN1 40S ribosomal protein S241.9e-66100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1HN66 40S ribosomal protein S241.9e-66100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1KJ42 40S ribosomal protein S249.5e-6698.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASD+AKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S243.1e-3765.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Q5RAQ8 40S ribosomal protein S243.1e-3765.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Q8LC83 40S ribosomal protein S24-21.1e-5887.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S243.3e-3963.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-12.0e-6090.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.4e-6190.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein7.7e-6087.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCTAATGTCTC
AAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGT
TCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAG
GAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
TCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTCGGGGCACATTCAGTCATGGCGGAC
AAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCTAATGTCTCAAAGGCTGA
GCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGA
TCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAG
AACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGGATGCTGGAGTTTTGTTCTTATCACCAAGGATCG
TCTGCAGAATTGGGTTGCTTTCTTTTTAATAGTCTCTTTTAGTTTTCGTTTTATTACTCCTAAATGAAGTTATTATGTTAATCAGTGATTTGGTTGTTGGTGACTAGTGA
TATCAAAACTTGTTCAACATTTTTGACGTTACAGTTAATATATTTCCTTGTTTTTCC
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMK
ERKNRAKKIRGVKKTKASDAAKAGKKK