; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17589 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17589
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionslit homolog 2 protein-like isoform X2
Genome locationCarg_Chr12:10612076..10616935
RNA-Seq ExpressionCarg17589
SyntenyCarg17589
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021150.1 hypothetical protein SDJN02_17838, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-80100Show/hide
Query:  MRVRFRLEAYSRLRRRSHFSSLRSLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYSTIGSDCAKLG
        MRVRFRLEAYSRLRRRSHFSSLRSLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYSTIGSDCAKLG
Subjt:  MRVRFRLEAYSRLRRRSHFSSLRSLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYSTIGSDCAKLG

Query:  IKVANVNSSDNGSGGSGTGQGNSLLPGKFGWVAMAILFGMTMELWN
        IKVANVNSSDNGSGGSGTGQGNSLLPGKFGWVAMAILFGMTMELWN
Subjt:  IKVANVNSSDNGSGGSGTGQGNSLLPGKFGWVAMAILFGMTMELWN

XP_022937685.1 uncharacterized protein LOC111444015 [Cucurbita moschata]1.9e-6698.4Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGWVAMAILFGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

XP_022965938.1 uncharacterized protein LOC111465666 [Cucurbita maxima]9.4e-6696.8Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGW AMAI+FGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

XP_023521139.1 uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo]9.4e-6697.6Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCEC SGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGWVAMAILFGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

XP_023537938.1 uncharacterized protein LOC111798832 [Cucurbita pepo subsp. pepo]9.4e-6697.6Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCEC SGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGWVAMAILFGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

TrEMBL top hitse value%identityAlignment
A0A0A0LLE2 Uncharacterized protein3.1e-5480.16Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSG-GSGTGQ
        +LDYGCQ APPPVP+KPVP+NSSFFNPCYWAYCG+G C +N TY HTCEC+SG+YNLLNIS FPCYS  TIGSDCAKLGIKVANVN +DNGSG G+GTG 
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSG-GSGTGQ

Query:  GNSLLPGKFGWVAMAILFGMTMELWN
        GNS+LPGKF WVA+AILF M MELWN
Subjt:  GNSLLPGKFGWVAMAILFGMTMELWN

A0A5A7VDL6 MtN262.5e-4077.23Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        +L+YGCQ APPPVP+KPVP+NSSFFNPCYWAYCGEG C +N TY HTCECR GFYNLLNIS FPCY+  TIGSDCAKLGIKVANVN +DN   GSG G G
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  N
        +
Subjt:  N

A0A6J1CPY4 uncharacterized protein LOC1110130883.5e-5078.4Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SL+YGCQ APPPVPDK VPRNSSFF+PCYWAYCGEG C KN TY HTC C  G+YNLLN SAFPCYS  TIGSDCAKLGIKVANVNS+ NG+ G GTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NS++PGKF  VAMAI+F M MELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

A0A6J1FHH1 uncharacterized protein LOC1114440159.2e-6798.4Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGWVAMAILFGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

A0A6J1HQE9 uncharacterized protein LOC1114656664.6e-6696.8Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
        SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS  TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG
Subjt:  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGSGGSGTGQG

Query:  NSLLPGKFGWVAMAILFGMTMELWN
        NSLLPGKFGW AMAI+FGMTMELWN
Subjt:  NSLLPGKFGWVAMAILFGMTMELWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G14746.1 CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1.9e-1635.59Show/hide
Query:  SLDYGCQSAPPPVPDKPVPRN--SSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGS-GGSGT
        + D  C  A  P   KP P++  +SFF+PC W  CG G C  +  + ++C CR G+ NL+NI+ FPC     +G DC  LGI ++N +SS   +   S  
Subjt:  SLDYGCQSAPPPVPDKPVPRN--SSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS--TIGSDCAKLGIKVANVNSSDNGS-GGSGT

Query:  GQGNSLLPGKFGWVAMAI
         QG +L      W+ + +
Subjt:  GQGNSLLPGKFGWVAMAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTTCTCTCGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACC
AGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGTGAGAAGAACAATACGTATGCACACACGTGTGAATGCA
GATCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTACGATCGGGTCGGATTGTGCAAAACTTGGGATTAAAGTTGCTAATGTAAATTCAAGCGAT
AATGGAAGTGGGGGTTCTGGTACCGGACAAGGAAACTCCCTTCTACCAGGAAAGTTTGGGTGGGTGGCTATGGCAATTTTATTTGGCATGACTATGGAGCTTTGGAACTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTTCTCTCGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACC
AGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGTGAGAAGAACAATACGTATGCACACACGTGTGAATGCA
GATCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTACGATCGGGTCGGATTGTGCAAAACTTGGGATTAAAGTTGCTAATGTAAATTCAAGCGAT
AATGGAAGTGGGGGTTCTGGTACCGGACAAGGAAACTCCCTTCTACCAGGAAAGTTTGGGTGGGTGGCTATGGCAATTTTATTTGGCATGACTATGGAGCTTTGGAACTA
GCAGATCCTTGATTATATATATAAAATTGATATTCATTTATGTTGTTTACACTATGTTTTGGTTTCATATCGATTGTTATTATATGTTGTGTCTGAGTTTGGTACATTAT
CATATATATAATAAATAAATCATAGCTCTAGTCATTAGAGGCTGCTGATCACTGTTTTTGTACATATATTCATCTTACTATATTATTTCTACAATTTGCACAAGATATAT
CCCATCCCAAATATTCATCTTGGTACAATTTACAAATATATCCCATCCCAGATTGAGCAGATCATCAGCAAAAATTTGCACAAGATTTCTTATAATACAGAGATGAAATC
AAGCTGACTATCACCAAGAAATCATGAACAAAAATGGAAAAGTTTCGATTCAAATCTCTAATATACGGATTAGAAGAAAGTAAAAGGAATCGAACGAACAGTTTTTAGCA
GAACTCACCAATGGAAGGTAATGGAAACGGAAATCATTTGGTCTTGATATCGATTCCATCTTTTCCGGCGATGATTACGGCGGTCGCCATGTCCAAGAAGAGTCCGTGCT
CCACCACGCCTTCAAACGCTGAAATCTCTTTTCCGGCGGCTAATCCGTCTTTGATTGGAGTCTTGAAATATAAATCGACTATGTAATTTGAATTATCGGTGACGTATGGC
TTCCCATCGGCGTCCAATCGGAGCTTGGCCTCGCAATCTTCGTCCTTGAATAGGTCTTGAAGCCTCACCAAATTGTATTTCCAGCAGAACTGAACGACTTCCACCGGCAT
CGCGAGACCGCTTCCGCCGAGGCCGTCAACTAATTTAGTATCATCGACGACGACGACGAACTTATCGGAAGCAGCCTCAACCATTTTCTCACGCAACAAAGCGCCGCCGC
GGCCTTTAACGAGATTCAGATCTGGATCGACCTCATCAGCGCCATCGATAGCCAAATCGAGATGCGGATGATCATCAAGAACAGAGAGAGGAATTCCTAATGCCTTAGCT
TGCTCCTCCGTCCGCTTGGAGGTAGGGATTCCAACAATGTCACTCAATTGATTACTCTTGAGAAGTTCGCCAATCTTAGCGACAACGAAAGCGGCGGTGGAGCCAGTGCC
GAGGCCGAGAACCATTCCACTCTTGACATACTCAACAGCCTTGTCGGCAGCAAGCTTCTTGAGGTCGTCTTGAGTGAGAGTGGAGACGGAGCGGGCTTGAACGGAGAGAG
GACGGCAGCGGTGCTGGTTATTGGCGGAAAGATTAAGAGGCTTTGGTGATCGGAGAAGAAGGTTGGCTATGGAGGAAACATGGCGGGAGGAAGAGAGAGAAGGAGGAGAG
ATGAGAGAGAGGGAAGCCATGGATGAGAAAGGGATAGGGTTTTGAGTTTCTAGTGGCTAATGTCTCTGCATTTTCTTCCTTTTATA
Protein sequenceShow/hide protein sequence
MRVRFRLEAYSRLRRRSHFSSLRSLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYSTIGSDCAKLGIKVANVNSSD
NGSGGSGTGQGNSLLPGKFGWVAMAILFGMTMELWN