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Carg17599 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17599
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPSII 6.1 kDa protein
Genome locationCarg_Chr12:10695452..10697003
RNA-Seq ExpressionCarg17599
SyntenyCarg17599
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]1.8e-4778.2Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]3.6e-64100Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

XP_022966002.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]9.2e-6094.74Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQK KKGGIKC+LEEKQE K SKES+ISGTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]3.4e-6296.99Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQKMKKGGIKC+LEEKQEGKRSKES+ISGTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.0e-5079.7Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P +AAHRLP++QKMKKGGIKC++EEK EGK+S+ESL+SGT+AA+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAG+F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein3.7e-4676.87Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++ GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein8.7e-4878.2Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

A0A6J1CNY5 PSII 6.1 kDa protein3.7e-4678.2Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+TLKGSPKL P P MAA RL +V KMKKGGIKCK+EE+ E K S ES +S T+AA+   VVA AGPA ALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        L WILAG+F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein1.7e-64100Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein4.4e-6094.74Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQK KKGGIKC+LEEKQE K SKES+ISGTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.1e-2653.96Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPF
        MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       S++   V+A AT  +   M+ PA+ALVDER+STEGTGLPF
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPF

Query:  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        GLSNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Subjt:  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic5.5e-2346.38Show/hide
Query:  STLLSHSGITLKGSPKLLPPPLMAAHRLPVV---QKMKKGGIKCKLEEK----QEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFG
        +T+ + S  +L     L+    +     P++      K+  + C +E K    +    + +S+ +  +AA A   +  + PA+ALVDER+STEGTGLPFG
Subjt:  STLLSHSGITLKGSPKLLPPPLMAAHRLPVV---QKMKKGGIKCKLEEK----QEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFG

Query:  LSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        LSNNLLGWIL G+FG IWALYFVYAS LEEDE+SGLSL
Subjt:  LSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.1e-1849.5Show/hide
Query:  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS
        LP ++  +   ++C   ++     +       ++ AMA T    A PA+ALVDER+STEGTGL  GLSNNLLGWIL G+FG IW+LY +Y S LEEDE+S
Subjt:  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS

Query:  G
        G
Subjt:  G

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.4e-1040Show/hide
Query:  IKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLE--EDEDSGLSL
        + CK    +     K +++S   A +A      A PA ALVDER++ +GTG PFG+++ +LGW+L G+FG +WA++F+    L   ED D GL L
Subjt:  IKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLE--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.2e-2753.96Show/hide
Query:  MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPF
        MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       S++   V+A AT  +   M+ PA+ALVDER+STEGTGLPF
Subjt:  MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPF

Query:  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
        GLSNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Subjt:  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAA
GAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGG
CGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGT
TTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGA
mRNA sequenceShow/hide mRNA sequence
TCACTATCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTC
CACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAG
GGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCG
GCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTG
GGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAA
ATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTTAATGAAACGTTATTCCTCTCGACGACCTTGACCAAAATTAGTAATGAAAATAAAATGTGGGAA
TCACTCGAACATGTGGGTCAGCTACAAATTAGGGGTGTTCATGTGAATCGAGAACTCGACCAACTTGAACTATGGGAATCGATTTGGGGTGTTGGTTCATGGGTTGAG
Protein sequenceShow/hide protein sequence
MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFG
FIWALYFVYASSLEEDEDSGLSL