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Carg17605 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17605
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAlba domain-containing protein
Genome locationCarg_Chr12:10741102..10742393
RNA-Seq ExpressionCarg17605
SyntenyCarg17605
Gene Ontology termsGO:0048235 - pollen sperm cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586319.1 hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sororia]7.3e-5794.93Show/hide
Query:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------
        MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA      
Subjt:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------

Query:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
         KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
Subjt:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

KAG7021166.1 hypothetical protein SDJN02_17854, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-60100Show/hide
Query:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKSE
        IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKSE
Subjt:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKSE

Query:  KFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
        KFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
Subjt:  KFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

XP_022938043.1 uncharacterized protein At2g34160-like [Cucurbita moschata]2.0e-5492.75Show/hide
Query:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA      
Subjt:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------

Query:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
         KSEKFDSLMTAATV AEAAAGG EEKKKAGEESKEGQ
Subjt:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

XP_022965411.1 uncharacterized protein At2g34160-like [Cucurbita maxima]1.5e-5793.62Show/hide
Query:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---
        IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA   
Subjt:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---

Query:  ----KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
            KSEKFDSLMTAATV AEA AGGGEEKKKAGEESKEGQ
Subjt:  ----KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

XP_023537985.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]3.6e-5692.96Show/hide
Query:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---
        IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA   
Subjt:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---

Query:  ----KSEKFDSL-MTAATVTAEAAAGGGEEKKKAGEESKEGQ
            KSEKFDSL MTAATV  EAAAGGGEEKKKAGEESKEGQ
Subjt:  ----KSEKFDSL-MTAATVTAEAAAGGGEEKKKAGEESKEGQ

TrEMBL top hitse value%identityAlignment
A0A0A0LG69 Alba domain-containing protein3.1e-4582.64Show/hide
Query:  MTTTIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---
        M  TIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA   
Subjt:  MTTTIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---

Query:  ----KSEKFDSLMTAATVTAE---AAAGGGEEKKKAGEESKEGQ
            KSEKFDSLMTAAT   E   A A   EE+KKA EESKE Q
Subjt:  ----KSEKFDSLMTAATVTAE---AAAGGGEEKKKAGEESKEGQ

A0A5D3D4G4 Alba DNA/RNA-binding protein3.1e-4583.69Show/hide
Query:  TIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------
        TIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA      
Subjt:  TIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------

Query:  -KSEKFDSLMTAATVTAE---AAAGGGEEKKKAGEESKEGQ
         KSEKFDSLMTAAT   E   A A  GEE+KKA EE+KE Q
Subjt:  -KSEKFDSLMTAATVTAE---AAAGGGEEKKKAGEESKEGQ

A0A6J1CQ10 uncharacterized protein At2g341608.2e-4687.22Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KS
        TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KS

Query:  EKFDSLMTAATVTAEAAAGGGEEKKKAGEESKE
        EKFDSLMTAAT  A  AA   EEKK   EESKE
Subjt:  EKFDSLMTAATVTAEAAAGGGEEKKKAGEESKE

A0A6J1FHQ7 uncharacterized protein At2g34160-like9.7e-5592.75Show/hide
Query:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA      
Subjt:  MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA------

Query:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
         KSEKFDSLMTAATV AEAAAGG EEKKKAGEESKEGQ
Subjt:  -KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

A0A6J1HLL6 uncharacterized protein At2g34160-like7.1e-5893.62Show/hide
Query:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---
        IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA   
Subjt:  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA---

Query:  ----KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ
            KSEKFDSLMTAATV AEA AGGGEEKKKAGEESKEGQ
Subjt:  ----KSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.5e-3371.17Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKA       KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSL

Query:  MTAATVTAEAA
        M AA    E A
Subjt:  MTAATVTAEAA

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.2e-3572.07Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQK-------AKSEKFDSL
        A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR VQK       AKSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQK-------AKSEKFDSL

Query:  MTAATVTAEAA
        M AA    EAA
Subjt:  MTAATVTAEAA

AT2G34160.1 Alba DNA/RNA-binding protein1.1e-3471.17Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKA       KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSL

Query:  MTAATVTAEAA
        M AA    E A
Subjt:  MTAATVTAEAA

AT3G04620.1 Alba DNA/RNA-binding protein2.1e-3869.92Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KS
        T   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTSTVGMKDE KG++VQKA       KS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KS

Query:  EKFDSLMTAAT---VTAEAAAGGGEEKKKAGEE
        +KFDSL+   T      E A+   E   +A EE
Subjt:  EKFDSLMTAAT---VTAEAAAGGGEEKKKAGEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGAAGATATGACAACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCT
TGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTA
CCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTAGTTCAGAAAGCTAAGTCGGAGAAATTTGATTCTTTGATGACGGCGGCCACG
GTGACGGCGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATAGAAGATATGACAACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCT
TGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTA
CCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTAGTTCAGAAAGCTAAGTCGGAGAAATTTGATTCTTTGATGACGGCGGCCACG
GTGACGGCGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG
Protein sequenceShow/hide protein sequence
IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKSEKFDSLMTAAT
VTAEAAAGGGEEKKKAGEESKEGQ