; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17633 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17633
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE6-like
Genome locationCarg_Chr12:4568814..4571992
RNA-Seq ExpressionCarg17633
SyntenyCarg17633
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585800.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia]5.9e-3798.88Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHG+MNDLSERLSQLLAATQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

KAG7020733.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-203100Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRNPPAFRVQ
        MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRNPPAFRVQ
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRNPPAFRVQ

Query:  RSRWLSFLSPIDVGSHNLPPSRSSVLASTSFHVYLPFGAQRPCWHSFLSSIDVGSHNPPPFGPSVFVDTPPGVNLPSGLNVLAGTPAQRPRWHLFLSPID
        RSRWLSFLSPIDVGSHNLPPSRSSVLASTSFHVYLPFGAQRPCWHSFLSSIDVGSHNPPPFGPSVFVDTPPGVNLPSGLNVLAGTPAQRPRWHLFLSPID
Subjt:  RSRWLSFLSPIDVGSHNLPPSRSSVLASTSFHVYLPFGAQRPCWHSFLSSIDVGSHNPPPFGPSVFVDTPPGVNLPSGLNVLAGTPAQRPRWHLFLSPID

Query:  AGSHNLPPSRSSVLAGTPFHVHLPSGPNVPAGTRSSLQSMWDLTIHLPLRSNVLAITRSFFQSIWDLTIHLPSGPSVLAGTPSDVHLPSLPTSSLTLIPL
        AGSHNLPPSRSSVLAGTPFHVHLPSGPNVPAGTRSSLQSMWDLTIHLPLRSNVLAITRSFFQSIWDLTIHLPSGPSVLAGTPSDVHLPSLPTSSLTLIPL
Subjt:  AGSHNLPPSRSSVLAGTPFHVHLPSGPNVPAGTRSSLQSMWDLTIHLPLRSNVLAITRSFFQSIWDLTIHLPSGPSVLAGTPSDVHLPSLPTSSLTLIPL

Query:  SNQCENSQSTPFWAQCFHFPSGLSALLAHHSVSSSNTTCNSPSPLLVLFKLFLLRFP
        SNQCENSQSTPFWAQCFHFPSGLSALLAHHSVSSSNTTCNSPSPLLVLFKLFLLRFP
Subjt:  SNQCENSQSTPFWAQCFHFPSGLSALLAHHSVSSSNTTCNSPSPLLVLFKLFLLRFP

XP_022952041.1 transcription factor PRE6-like [Cucurbita moschata]2.0e-37100Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

XP_023002684.1 transcription factor PRE6-like [Cucurbita maxima]2.5e-3595.51Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSS SRNSSPAHISDHQITD+VSKLQRLIPQIRNIP NKVSASEVLQETCNYIRSLHGEMNDLS+RLSQLLAATQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

XP_023538516.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]2.5e-3595.51Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPS+KVSA EVLQETCNYIRSLHGEMNDLSERLSQL+A TQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

TrEMBL top hitse value%identityAlignment
A0A6J1DBW8 transcription factor PRE6-like1.5e-2578.02Show/hide
Query:  MSTRRSSRSRNSS--PAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+RRSSRSRNS+   AHISD +I DLVSKLQRLIP+IRN  S+KV+AS+VLQETCNYIRSLH E++DLSERLSQLLAAT+N SAEAA+IR
Subjt:  MSTRRSSRSRNSS--PAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

A0A6J1G4C0 transcription factor PRE6-like7.1e-2882.02Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+RRSSRSRNSS A ISD QI+DLVSKLQRLIP+IRN  S+KVSAS+VLQETCNYIR+LH E++DLSERLSQLLAAT+NDSAEAA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

A0A6J1GJ61 transcription factor PRE6-like9.8e-38100Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

A0A6J1KGK3 transcription factor PRE6-like7.1e-2882.02Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+RRSSRSRNSS A ISD QI+DLVSKLQRLIP+IRN  S+KVSAS+VLQETCNYIR+LH E++DLSERLSQLLAAT+NDSAEAA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

A0A6J1KR56 transcription factor PRE6-like1.2e-3595.51Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MSTRRSS SRNSSPAHISDHQITD+VSKLQRLIPQIRNIP NKVSASEVLQETCNYIRSLHGEMNDLS+RLSQLLAATQNDSAEAALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI71.1e-1759.55Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+R  SRSR SS A I+D QI DLVSKLQ L+P+ R   +++V ++ VLQETC+YIRSLH E++DLSERL++LLAA    +A+AA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

B8APB5 Transcription factor ILI62.0e-1961.8Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+RR SRSR S  + I+D QI+DLVSKLQ L+P+ R   +++V +S VLQETCNYIRSLH E++DLSERLS+LLA +   SA+AA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

Q0DUR2 Transcription factor ILI62.0e-1961.8Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+RR SRSR S  + I+D QI+DLVSKLQ L+P+ R   +++V +S VLQETCNYIRSLH E++DLSERLS+LLA +   SA+AA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

Q338G6 Transcription factor ILI76.4e-1860Show/hide
Query:  RSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        R SRSR SS A I+D QI DLVSKLQ L+P+ R   +++V ++ VLQETC+YIRSLH E++DLSERL++LLAA    +A+AA+IR
Subjt:  RSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

Q8GW32 Transcription factor PRE67.0e-2567.74Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRN
        MS+RRSSRSR S  + ISD QI+DLVSKLQ LIP++R   S+KVSAS+VLQETCNYIR+LH E++DLS+RLS+LLA+T ++SAEAA+IR   N
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRN

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.0e-2667.74Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRN
        MS+RRSSRSR S  + ISD QI+DLVSKLQ LIP++R   S+KVSAS+VLQETCNYIR+LH E++DLS+RLS+LLA+T ++SAEAA+IR   N
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRN

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.9e-1857.78Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNI-PSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS RRS   ++S  + IS+ QI DL+ KLQ+L+P++R+   S+KVSA+ VLQ+TCNYIR+LH E++DLSERLS+LLA   +D+A+AALIR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNI-PSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.5e-1858.89Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQI-RNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS RRS ++ N+S   ISD Q+ DLVSKL++ +P+I     S+KVSAS+VLQETCNYIR LH E+++LS+RLSQLL +   DS EAA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQI-RNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

AT5G15160.1 BANQUO 26.5e-1860Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIR-NIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS+ R SR  +SS + ISD QITDL+SKL++ IP+IR N  SN VSAS+VLQETCNYIR+L+ E +DLS+RL+QLL +   +S +AA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIR-NIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein8.5e-1858.89Show/hide
Query:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQI-RNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR
        MS RRS +S  SS   ISD+Q+ DLVSKL++++P+I +   S+K SAS+VLQETCNYIR+L+ E+++LSERLSQLL +   DS EAA+IR
Subjt:  MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQI-RNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCCGACGATCATCTCGTTCCAGAAACTCCTCCCCCGCTCATATCTCTGACCATCAGATCACCGACCTTGTTTCCAAGCTGCAGCGTCTCATCCCTCAAATTCG
CAACATTCCTTCCAACAAGGTGTCGGCTTCCGAAGTGTTGCAAGAAACGTGCAATTACATAAGGAGCTTACATGGGGAAATGAATGATTTAAGTGAGCGATTGTCGCAGC
TCTTAGCCGCAACACAAAACGATAGCGCCGAGGCTGCTCTCATTAGGAGATCTCGCAATCCACCTGCCTTCAGAGTCCAACGTTCTCGCTGGCTCTCGTTCCTCTCTCCC
ATCGATGTTGGGTCTCACAATCTACCCCCTTCAAGGTCTAGTGTCCTTGCTAGCACATCATTCCATGTCTACCTCCCTTTCGGGGCCCAACGTCCTTGTTGGCACTCGTT
CCTCTCTTCAATCGATGTGGGATCTCACAATCCACCCCCTTTTGGGCCTAGTGTCTTCGTTGACACACCACCTGGTGTCAACCTCCCTTCGGGGCTCAATGTGCTCGCTG
GCACACCAGCCCAACGTCCTCGTTGGCACTTGTTCCTCTCTCCCATCGATGCTGGGTCTCACAATCTACCTCCTTCAAGGTCCAGTGTCCTTGCTGGCACACCATTCCAT
GTCCACCTCCCTTCGGGGCCCAACGTCCCTGCTGGCACTCGTTCCTCTCTTCAATCGATGTGGGATCTCACAATTCACCTCCCTTTGAGGTCCAACGTTCTTGCTATTAC
TCGTTCCTTTTTCCAATCGATTTGGGATCTCACAATCCACCTACCTTCGGGGCCCAGCGTCCTTGCTGGCACACCGTCCGATGTCCACCTCCCTTCATTGCCCACGTCCT
CGCTGACACTCATTCCTCTCTCCAATCAATGTGAAAACTCACAATCCACCCCATTCTGGGCTCAATGTTTCCACTTTCCTTCAGGGCTCAGTGCCTTGCTGGCACATCAC
TCGGTGTCTAGCTCTAATACCACTTGTAACAGCCCAAGCCCACTCCTTGTTCTCTTTAAGCTTTTCCTCTTGAGATTTCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCCGACGATCATCTCGTTCCAGAAACTCCTCCCCCGCTCATATCTCTGACCATCAGATCACCGACCTTGTTTCCAAGCTGCAGCGTCTCATCCCTCAAATTCG
CAACATTCCTTCCAACAAGGTGTCGGCTTCCGAAGTGTTGCAAGAAACGTGCAATTACATAAGGAGCTTACATGGGGAAATGAATGATTTAAGTGAGCGATTGTCGCAGC
TCTTAGCCGCAACACAAAACGATAGCGCCGAGGCTGCTCTCATTAGGAGATCTCGCAATCCACCTGCCTTCAGAGTCCAACGTTCTCGCTGGCTCTCGTTCCTCTCTCCC
ATCGATGTTGGGTCTCACAATCTACCCCCTTCAAGGTCTAGTGTCCTTGCTAGCACATCATTCCATGTCTACCTCCCTTTCGGGGCCCAACGTCCTTGTTGGCACTCGTT
CCTCTCTTCAATCGATGTGGGATCTCACAATCCACCCCCTTTTGGGCCTAGTGTCTTCGTTGACACACCACCTGGTGTCAACCTCCCTTCGGGGCTCAATGTGCTCGCTG
GCACACCAGCCCAACGTCCTCGTTGGCACTTGTTCCTCTCTCCCATCGATGCTGGGTCTCACAATCTACCTCCTTCAAGGTCCAGTGTCCTTGCTGGCACACCATTCCAT
GTCCACCTCCCTTCGGGGCCCAACGTCCCTGCTGGCACTCGTTCCTCTCTTCAATCGATGTGGGATCTCACAATTCACCTCCCTTTGAGGTCCAACGTTCTTGCTATTAC
TCGTTCCTTTTTCCAATCGATTTGGGATCTCACAATCCACCTACCTTCGGGGCCCAGCGTCCTTGCTGGCACACCGTCCGATGTCCACCTCCCTTCATTGCCCACGTCCT
CGCTGACACTCATTCCTCTCTCCAATCAATGTGAAAACTCACAATCCACCCCATTCTGGGCTCAATGTTTCCACTTTCCTTCAGGGCTCAGTGCCTTGCTGGCACATCAC
TCGGTGTCTAGCTCTAATACCACTTGTAACAGCCCAAGCCCACTCCTTGTTCTCTTTAAGCTTTTCCTCTTGAGATTTCCCTAA
Protein sequenceShow/hide protein sequence
MSTRRSSRSRNSSPAHISDHQITDLVSKLQRLIPQIRNIPSNKVSASEVLQETCNYIRSLHGEMNDLSERLSQLLAATQNDSAEAALIRRSRNPPAFRVQRSRWLSFLSP
IDVGSHNLPPSRSSVLASTSFHVYLPFGAQRPCWHSFLSSIDVGSHNPPPFGPSVFVDTPPGVNLPSGLNVLAGTPAQRPRWHLFLSPIDAGSHNLPPSRSSVLAGTPFH
VHLPSGPNVPAGTRSSLQSMWDLTIHLPLRSNVLAITRSFFQSIWDLTIHLPSGPSVLAGTPSDVHLPSLPTSSLTLIPLSNQCENSQSTPFWAQCFHFPSGLSALLAHH
SVSSSNTTCNSPSPLLVLFKLFLLRFP