CuGenDBv2

Gene ID	Carg17635
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding 24
Genome location	Carg_Chr12:4529800..4530009
RNA-Seq Expression	Carg17635
Synteny	Carg17635
Gene Ontology terms	GO:0030154 - cell differentiation (biological process) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR037366 - BOULE/DAZ family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020731.1 hypothetical protein SDJN02_17419, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-32

100

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_008464801.1 PREDICTED: RNA-binding protein 24-A [Cucumis melo]

1.4e-30

95.71

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_022951231.1 RNA-binding protein 24-B-like [Cucurbita moschata]

3.6e-31

97.14

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPT YHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_023002633.1 RNA-binding protein 24-B-like [Cucurbita maxima]

2.8e-31

97.14

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGA+HGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_023537721.1 RNA-binding protein 24-B-like [Cucurbita pepo subsp. pepo]

1.2e-31

98.57

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHA9 RRM domain-containing protein

6.6e-31

95.71

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A1S3CME8 RNA-binding protein 24-A

6.6e-31

95.71

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A5D3CHF9 RNA-binding protein 24-A

6.6e-31

95.71

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A6J1GGZ8 RNA-binding protein 24-B-like

1.7e-31

97.14

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPT YHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A6J1KR06 RNA-binding protein 24-B-like

1.3e-31

97.14

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQIYGVPGS SPTIYHYGQLGQTVPGGHGYGA+HGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.2e-12

48.57

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY  P   ++Q          +SPM  IQ+PYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein

5.2e-12

48.57

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY  P   ++Q          +SPM  IQ+PYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein

8.9e-20

58.57

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Query:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY +P   I+Q  GP V+ +T+S MP +QAPYPS
Subjt:  QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

Sequences

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CDS sequence

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CAATACCTGCAGATTTATGGGGTGCCTGGGTCAGGAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGG
ATATGGAATGCCAAGTCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCACCATATCCTTCA

mRNA sequence

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Protein sequence

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QYLQIYGVPGSGSPTIYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

Carg17635 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome