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Carg17646 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17646
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Genome locationCarg_Chr12:4432359..4435126
RNA-Seq ExpressionCarg17646
SyntenyCarg17646
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006406 - mRNA export from nucleus (biological process)
GO:0043248 - proteasome assembly (biological process)
GO:0008541 - proteasome regulatory particle, lid subcomplex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007834 - DSS1/SEM1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585783.1 hypothetical protein SDJN03_18516, partial [Cucurbita argyrosperma subsp. sororia]1.4e-30100Show/hide
Query:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_004144232.1 protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus]4.8e-2690.28Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_022951372.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita moschata]4.6e-2995.89Show/hide
Query:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATE KAATEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_023002030.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita maxima]2.8e-2691.67Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KA TEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE NA RK
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_023537610.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita pepo subsp. pepo]1.0e-2894.52Show/hide
Query:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATE+KAATEEVKVDLFEDDDEFEEFEINEEWEVK+G+EI QQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIG9 Uncharacterized protein2.3e-2690.28Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A1S3CMK4 protein DSS1 HOMOLOG ON CHROMOSOME V-like2.3e-2690.28Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1GHI9 protein DSS1 HOMOLOG ON CHROMOSOME V-like2.2e-2995.89Show/hide
Query:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATE KAATEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1KGK6 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like3.0e-2690.28Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAATEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE N  +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1KMT1 protein DSS1 HOMOLOG ON CHROMOSOME V-like1.4e-2691.67Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KA TEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELE NA RK
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

SwissProt top hitse value%identityAlignment
P60896 26S proteasome complex subunit SEM15.7e-0648.39Show/hide
Query:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR
        + V + L E+DDEFEEF   E+W     +E    WED+WDDD+V DDFS QL+ ELE +  +
Subjt:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR

P60897 26S proteasome complex subunit SEM15.7e-0648.39Show/hide
Query:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR
        + V + L E+DDEFEEF   E+W     +E    WED+WDDD+V DDFS QL+ ELE +  +
Subjt:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR

Q3ZBR6 26S proteasome complex subunit SEM15.7e-0648.39Show/hide
Query:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR
        + V + L E+DDEFEEF   E+W     +E    WED+WDDD+V DDFS QL+ ELE +  +
Subjt:  EEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR

Q9FL96 Protein DSS1 HOMOLOG ON CHROMOSOME V2.6e-1969.86Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA E KAA E VKVDLFEDDDEFEEFEINE+W E ++ +E++ QWEDDWDDDDV+DDFS QLK+ELE+ + +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

Q9XIR8 Protein DELETION OF SUV3 SUPPRESSOR 1(I)2.6e-1970.27Show/hide
Query:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA E KAAT E VK+DLFEDDDEFEEFEINE+W E ++ +E++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

Arabidopsis top hitse value%identityAlignment
AT1G64750.1 deletion of SUV3 suppressor 1(I)1.9e-2070.27Show/hide
Query:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA E KAAT E VK+DLFEDDDEFEEFEINE+W E ++ +E++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

AT1G64750.2 deletion of SUV3 suppressor 1(I)1.9e-2070.27Show/hide
Query:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA E KAAT E VK+DLFEDDDEFEEFEINE+W E ++ +E++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATESKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

AT1G64750.3 deletion of SUV3 suppressor 1(I)2.0e-1445.22Show/hide
Query:  MATESKAATEE-VKVDLFEDDDEFEEFEINE-----------------------------------------EW-EVKKGEEITQQWEDDWDDDDVNDDF
        MA E KAAT E VK+DLFEDDDEFEEFEINE                                         +W E ++ +E++QQWEDDWDDDDVNDDF
Subjt:  MATESKAATEE-VKVDLFEDDDEFEEFEINE-----------------------------------------EW-EVKKGEEITQQWEDDWDDDDVNDDF

Query:  SLQLKRELEHNAVRK
        S QL++ELE+   +K
Subjt:  SLQLKRELEHNAVRK

AT5G45010.1 DSS1 homolog on chromosome V1.9e-2069.86Show/hide
Query:  MATESKAATEEVKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA E KAA E VKVDLFEDDDEFEEFEINE+W E ++ +E++ QWEDDWDDDDV+DDFS QLK+ELE+ + +K
Subjt:  MATESKAATEEVKVDLFEDDDEFEEFEINEEW-EVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAACTGAATCGAAGGCAGCTACCGAGGAAGTGAAAGTTGACCTCTTCGAGGATGACGATGAGTTCGAAGAGTTCGAGATTAATGAAGAGTGGGAAGTCAAGAA
AGGTGAAGAAATTACTCAGCAGTGGGAAGACGACTGGGACGATGACGATGTGAATGACGACTTCTCGTTGCAACTTAAGAGAGAATTGGAGCACAATGCTGTGAGAAAAT
GA
mRNA sequenceShow/hide mRNA sequence
GTGCAGAAGCTCAACGACTTGTCCCTCAAGATATCTGGGTCAATTTTTTTTCACTAGAAATCAAGCAATACAAGACTCCCTCGATCTTCCTCGCTCGACTACTGTTCCAA
GCTGCGAATCTTTCTCACAACTCTCTCTAAGATTTGTAGAACAGTGTGGTCTTTATGATGGCAACTGAATCGAAGGCAGCTACCGAGGAAGTGAAAGTTGACCTCTTCGA
GGATGACGATGAGTTCGAAGAGTTCGAGATTAATGAAGAGTGGGAAGTCAAGAAAGGTGAAGAAATTACTCAGCAGTGGGAAGACGACTGGGACGATGACGATGTGAATG
ACGACTTCTCGTTGCAACTTAAGAGAGAATTGGAGCACAATGCTGTGAGAAAATGAAGAGACACTTAGGAATCTTATTCAACCAGGAATGTACCAAAAACTTCAACCATT
ATGAACTTGCTGTCATGAATACTGATGCCCATTCTTCCATAATATTTGAATGTTCTTCCTAGTACACGTTAGTGATACTAACACCATACATCGAA
Protein sequenceShow/hide protein sequence
MMATESKAATEEVKVDLFEDDDEFEEFEINEEWEVKKGEEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK