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Carg17651 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17651
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionWD repeat-containing protein DWA2-like
Genome locationCarg_Chr12:4405818..4406846
RNA-Seq ExpressionCarg17651
SyntenyCarg17651
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599107.1 WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
KAG7020716.1 WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-41100Show/hide
Query:  MNLFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVDLTRFLMGPTRYILELLSAQGRSL
        MNLFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVDLTRFLMGPTRYILELLSAQGRSL
Subjt:  MNLFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVDLTRFLMGPTRYILELLSAQGRSL
KAG7030046.1 WD repeat-containing protein DWA2 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
XP_022999730.1 WD repeat-containing protein DWA2-like [Cucurbita maxima]2.3e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
XP_023547262.1 WD repeat-containing protein DWA2-like [Cucurbita pepo subsp. pepo]2.3e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
TrEMBL top hitse value%identityAlignment
A0A1S3CMG4 WD repeat-containing protein DWA2-like isoform X13.2e-1161.02Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK AQV
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
A0A5A7TA39 WD repeat-containing protein DWA2-like isoform X13.2e-1161.02Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK AQV
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
A0A6J1DJW1 WD repeat-containing protein DWA21.9e-1161.02Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
A0A6J1G310 WD repeat-containing protein DWA2-like1.1e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
A0A6J1KGF3 WD repeat-containing protein DWA2-like1.1e-1153.33Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
        L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV       L  +L G T
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD------LTRFLMGPT
SwissProt top hitse value%identityAlignment
Q6NPN9 WD repeat-containing protein DWA22.1e-0746.3Show/hide
Query:  NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        N  T+  +  L  +   ++ VLW PSG  DKLIS+DE+N++ WSLD S+K A+V
Subjt:  NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
Arabidopsis top hitse value%identityAlignment
AT1G20540.1 Transducin/WD40 repeat-like superfamily protein6.3e-1252.54Show/hide
Query:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        L+  +N   +  +  L  +   ++ VLWWPSGR DKLISIDE+NI LWSLDCS+K A+V
Subjt:  LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
AT1G76260.1 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 21.5e-0846.3Show/hide
Query:  NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV
        N  T+  +  L  +   ++ VLW PSG  DKLIS+DE+N++ WSLD S+K A+V
Subjt:  NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTGTTTCCAATTGTAAATCAATTAACCATTCCCACTATTTGCGTTCTCTTTCCAAACAAAAATCTGCTGGACAGTGTTCTTTGGTGGCCATCTGGTAGACATGA
TAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAACTTGCTCAGGTAGACTTAACTCGATTTCTCATGGGACCAACGAGATACA
TTCTGGAGTTGTTATCTGCACAAGGAAGGAGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTGTTTCCAATTGTAAATCAATTAACCATTCCCACTATTTGCGTTCTCTTTCCAAACAAAAATCTGCTGGACAGTGTTCTTTGGTGGCCATCTGGTAGACATGA
TAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAACTTGCTCAGGTAGACTTAACTCGATTTCTCATGGGACCAACGAGATACA
TTCTGGAGTTGTTATCTGCACAAGGAAGGAGCTTGTAA
Protein sequenceShow/hide protein sequence
MNLFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVDLTRFLMGPTRYILELLSAQGRSL