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Carg17678 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17678
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc ion binding protein
Genome locationCarg_Chr12:4240328..4240734
RNA-Seq ExpressionCarg17678
SyntenyCarg17678
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020689.1 hypothetical protein SDJN02_17376, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-58100Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRR
        MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRR
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRR

Query:  YKLLKDVMC
        YKLLKDVMC
Subjt:  YKLLKDVMC

XP_004134287.1 uncharacterized protein LOC101222685 [Cucumis sativus]7.8e-3367.86Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES     R+CDWCR+   T RP+ A+     TSQK +K    ITE +SSA  +PSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

XP_022924678.1 uncharacterized protein LOC111432109 [Cucurbita moschata]1.6e-5493.75Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH   SNFYCGESA PITRLCDWCRT HTTRRPSPAAANNGATSQKPHK+TDQITETKSSAT VPSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

XP_023526855.1 uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]2.1e-5493.75Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH   SNFYCGESA PITRLCDWCRT HTTRRP PAAANNGATSQKPHKITDQITETKSSAT VPSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

XP_038904003.1 uncharacterized protein LOC120090420 [Benincasa hispida]1.4e-3468.14Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITD-QITETKSSATEVPSPRP
        MD NRPLCCLCGDVGF A LFRC+NCSNRFQH   SN+YCGES     ++CDWCR+   TRRP  A      T QK HKI+D QITE +SSA  +PSPRP
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITD-QITETKSSATEVPSPRP

Query:  APRRYKLLKDVMC
        APRRYKLLKDVMC
Subjt:  APRRYKLLKDVMC

TrEMBL top hitse value%identityAlignment
A0A0A0L5P1 Uncharacterized protein3.8e-3367.86Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES     R+CDWCR+   T RP+ A+     TSQK +K    ITE +SSA  +PSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

A0A1S3AVF1 uncharacterized protein LOC1034831226.5e-3367.86Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLN PLCCLCGDVGFPA LFRC NCSNRFQH   SN+Y GES   I R+CDWCR+   TRRP+  A     TSQK  K    ITE +SSA  +PSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

A0A5D3DB67 Uncharacterized protein6.5e-3367.86Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLN PLCCLCGDVGFPA LFRC NCSNRFQH   SN+Y GES   I R+CDWCR+   TRRP+  A     TSQK  K    ITE +SSA  +PSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

A0A6J1ED69 uncharacterized protein LOC1114321097.9e-5593.75Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA
        MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH   SNFYCGESA PITRLCDWCRT HTTRRPSPAAANNGATSQKPHK+TDQITETKSSAT VPSPRPA
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

A0A6J1IH20 uncharacterized protein LOC111472884 isoform X14.8e-2055.66Show/hide
Query:  PLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKL
        P+CCLCGDVGFPA LFRC  CS+RFQHS  + Y GESA  I  +CDWCR      R   AA   G  SQK     D   + + ++  +PSPR APRRYKL
Subjt:  PLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKL

Query:  LKDVMC
        LKDVMC
Subjt:  LKDVMC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02070.1 unknown protein1.4e-1641.22Show/hide
Query:  LCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKP-------------------HKIT------D
        +CC+CGDVGF  KLF C +C  RFQHS  + Y G+ A P T +CDWCR+    R+ S  A + G++S+KP                   H+I       D
Subjt:  LCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKP-------------------HKIT------D

Query:  QITE-TKSSATEVPSPRPAPRRYKLLKDVMC
        Q+ +        V SP+ A RRYKLLKDVMC
Subjt:  QITE-TKSSATEVPSPRPAPRRYKLLKDVMC

AT3G60520.1 unknown protein1.3e-2247.29Show/hide
Query:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGAT--------SQKPHKITDQ-ITETKSSA-
        +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E A PI ++CDWC+    +R  +    N G++        S   H+I  Q I +T SS+ 
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGAT--------SQKPHKITDQ-ITETKSSA-

Query:  --------TEVPSPRPAPRRYKLLKDVMC
                T VPSPRPA RRYKLLKDVMC
Subjt:  --------TEVPSPRPAPRRYKLLKDVMC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTG
CGGGGAATCGGCCGGCCCAATAACTCGACTCTGCGATTGGTGCCGAACCGCACACACAACGCGCCGCCCTAGCCCTGCAGCTGCGAACAATGGGGCCACATCCCAAAAGC
CTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGAAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTG
CGGGGAATCGGCCGGCCCAATAACTCGACTCTGCGATTGGTGCCGAACCGCACACACAACGCGCCGCCCTAGCCCTGCAGCTGCGAACAATGGGGCCACATCCCAAAAGC
CTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGAAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA
Protein sequenceShow/hide protein sequence
MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC