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Carg17684 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17684
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S acidic ribosomal protein P1-like
Genome locationCarg_Chr12:4203811..4204637
RNA-Seq ExpressionCarg17684
SyntenyCarg17684
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133766.1 60S acidic ribosomal protein P1 [Cucumis sativus]1.0e-4088.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAV-AAAPAGGAAGGAAAAAAPPPEEKKEEPK
        MS GEIACSYA+LIL DD IPITAEK+ATLVKAAKV  VESYW+ LFAKLAEKR+I DLILNVGAGGGAAV AAAPAGGAAGG AAAAAPPPEEKKEEPK
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAV-AAAPAGGAAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

XP_008437779.1 PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]1.8e-4088.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK
        MS GEIACSYA+LIL DD IPITAEK+ATLVKAA V  VESYW+SLFAKLAEKRNI DLILNVGAGGGAAVAAA PAGGAA G AAAAAPPPEEKKEEPK
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

XP_022924313.1 60S acidic ribosomal protein P1-like [Cucurbita moschata]1.7e-4695.54Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MSIGEIACSYASLILCDDGIPITAEK+ATLVKAAKV +V+SYWFSLFAKLAEKR IEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

XP_022980127.1 60S acidic ribosomal protein P1-like [Cucurbita maxima]8.9e-4897.32Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MSIGEIACSYASLILCDDGIPITAEKLATLV AAKVD VESYWF+LFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

XP_023528725.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo]2.8e-49100Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0L5M7 Uncharacterized protein5.1e-4188.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAV-AAAPAGGAAGGAAAAAAPPPEEKKEEPK
        MS GEIACSYA+LIL DD IPITAEK+ATLVKAAKV  VESYW+ LFAKLAEKR+I DLILNVGAGGGAAV AAAPAGGAAGG AAAAAPPPEEKKEEPK
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAV-AAAPAGGAAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A1S3AUG9 60S acidic ribosomal protein P1-like8.7e-4188.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK
        MS GEIACSYA+LIL DD IPITAEK+ATLVKAA V  VESYW+SLFAKLAEKRNI DLILNVGAGGGAAVAAA PAGGAA G AAAAAPPPEEKKEEPK
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A5D3DB57 60S acidic ribosomal protein P1-like8.7e-4188.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK
        MS GEIACSYA+LIL DD IPITAEK+ATLVKAA V  VESYW+SLFAKLAEKRNI DLILNVGAGGGAAVAAA PAGGAA G AAAAAPPPEEKKEEPK
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAA-PAGGAAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A6J1EC26 60S acidic ribosomal protein P1-like8.1e-4795.54Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MSIGEIACSYASLILCDDGIPITAEK+ATLVKAAKV +V+SYWFSLFAKLAEKR IEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

A0A6J1IQJ8 60S acidic ribosomal protein P1-like4.3e-4897.32Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MSIGEIACSYASLILCDDGIPITAEKLATLV AAKVD VESYWF+LFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-21.4e-2765.18Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVA-AAPAGGAAGGAAAAAAPPPEEKKEEPKE
        ++GE+ACSYA +IL D+GI IT++K+ATLVKAA V+ +ESYW  LFAK+AEKRN+ DLI+NVGAGGG   A  + A  AA G AAAAAP  EEKK+EP E
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVA-AAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

P50344 60S acidic ribosomal protein P12.6e-2662.5Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        MS  E+A SYA+LIL D+G+ ITA+KL  L+ AAKV ++E  W SLFAK  E ++++DL+LNVG+GGGAA AA   G AAGGAAA    P EEK EE KE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGF LFD
Subjt:  ESDDDMGFSLFD

P52855 60S acidic ribosomal protein P12.2e-3375.89Show/hide
Query:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE
        M+ GE+AC YA+LIL DDGI ITAEK+AT+VKAA + KVESYW +LFAKL EKRN+EDLIL+VG+GGGAA  AA A   AGGAAAAAAP  EEKKEE KE
Subjt:  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

Q8LCW9 60S acidic ribosomal protein P1-16.2e-2864.86Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAA    E+KK+EP EE
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SD D+GF LFD
Subjt:  SDDDMGFSLFD

Q8LEQ0 60S acidic ribosomal protein P1-32.1e-2866.96Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAAAP  EE KK+EP E
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family4.4e-2964.86Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAA    E+KK+EP EE
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SD D+GF LFD
Subjt:  SDDDMGFSLFD

AT1G01100.2 60S acidic ribosomal protein family4.4e-2964.86Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAA    E+KK+EP EE
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SD D+GF LFD
Subjt:  SDDDMGFSLFD

AT1G01100.4 60S acidic ribosomal protein family4.4e-2964.86Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAA    E+KK+EP EE
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SD D+GF LFD
Subjt:  SDDDMGFSLFD

AT5G47700.1 60S acidic ribosomal protein family1.5e-2966.96Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAAAP  EE KK+EP E
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT5G47700.2 60S acidic ribosomal protein family1.5e-2966.96Show/hide
Query:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE
        ++GE+ACSYA +IL D+GI ITA+K+ATLVKAA V  +ESYW  LFAK+AEKRN+ DLI+NVGAGGG     A A  AAGG AAAAAP  EE KK+EP E
Subjt:  SIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCGGAGAAATTGCTTGCTCCTACGCTTCTCTCATCCTCTGCGATGATGGCATCCCTATTACCGCAGAAAAACTTGCTACGCTTGTAAAGGCAGCTAAGGTTGA
CAAAGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGAAGATCTGATTCTCAATGTTGGTGCTGGTGGAGGCGCCGCAGTCGCTGCTG
CTCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCCGCCGCTGCTCCTCCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTG
TTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCGGAGAAATTGCTTGCTCCTACGCTTCTCTCATCCTCTGCGATGATGGCATCCCTATTACCGCAGAAAAACTTGCTACGCTTGTAAAGGCAGCTAAGGTTGA
CAAAGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGAAGATCTGATTCTCAATGTTGGTGCTGGTGGAGGCGCCGCAGTCGCTGCTG
CTCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCCGCCGCTGCTCCTCCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTG
TTTGATTAG
Protein sequenceShow/hide protein sequence
MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSL
FD