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Carg17690 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17690
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein arv1 homolog
Genome locationCarg_Chr12:4148641..4150359
RNA-Seq ExpressionCarg17690
SyntenyCarg17690
Gene Ontology termsGO:0006665 - sphingolipid metabolic process (biological process)
GO:0016125 - sterol metabolic process (biological process)
GO:0032366 - intracellular sterol transport (biological process)
GO:0097036 - regulation of plasma membrane sterol distribution (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0032541 - cortical endoplasmic reticulum (cellular component)
InterPro domainsIPR007290 - Arv1 protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582731.1 Protein ARV 1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5984.03Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYMLLRLSEKQSSMTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

KAG7020678.1 arv-1 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-85100Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSCNHFLVALGVSR
        REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSCNHFLVALGVSR
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSCNHFLVALGVSR

XP_022924656.1 protein arv1 homolog [Cucurbita moschata]1.1e-5984.03Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYMLLRLSEKQSSMTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

XP_022979274.1 protein arv1 homolog isoform X1 [Cucurbita maxima]7.7e-5881.94Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRD NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLIL KRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYMLLRLSEKQS MTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

XP_023527859.1 protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo]1.8e-5983.33Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYM+LRLSEKQSSMTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

TrEMBL top hitse value%identityAlignment
A0A1S3AUE9 protein arv1 homolog isoform X53.3e-4671.74Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MG +TN NRCVQCGF T+QLF+LYSPGNMHL+KCDNCKSVADEYIECE+MIVL+DLIL KRQAY HLLYN  D + LSRQDL WK GLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK
                    +RYMLL LSEKQ SM+FSSTIGICQK
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK

A0A1S3AVC0 protein arv1 homolog isoform X33.3e-4671.74Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MG +TN NRCVQCGF T+QLF+LYSPGNMHL+KCDNCKSVADEYIECE+MIVL+DLIL KRQAY HLLYN  D + LSRQDL WK GLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK
                    +RYMLL LSEKQ SM+FSSTIGICQK
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK

A0A1S4DSU3 protein arv1 homolog isoform X13.3e-4671.74Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MG +TN NRCVQCGF T+QLF+LYSPGNMHL+KCDNCKSVADEYIECE+MIVL+DLIL KRQAY HLLYN  D + LSRQDL WK GLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK
                    +RYMLL LSEKQ SM+FSSTIGICQK
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQK

A0A6J1E9K8 protein arv1 homolog5.2e-6084.03Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYMLLRLSEKQSSMTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

A0A6J1ISS9 protein arv1 homolog isoform X13.7e-5881.94Show/hide
Query:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG
        MGRD NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLIL KRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDA     
Subjt:  MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFG

Query:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC
                    +RYMLLRLSEKQS MTFSSTIGICQK+    C
Subjt:  REVPTPGMSCPSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSC

SwissProt top hitse value%identityAlignment
Q54GD9 Protein arv1 homolog2.0e-0840.62Show/hide
Query:  CVQCGFGTNQLFLLY---SPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYN
        C++CG   N ++  +     GN+ L +C +C   AD+Y+E + +IV +DL L K QAY HLL+N
Subjt:  CVQCGFGTNQLFLLY---SPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYN

Q5ANH2 Protein ARV15.2e-0940.3Show/hide
Query:  CVQCGFGT-NQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTD
        C++CG+   + L+  Y    + L  C  C  +AD+YIE + +I+ +D++LLKRQAY HL YNL + +
Subjt:  CVQCGFGT-NQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTD

Q5MK23 Protein ARV 21.7e-2353.41Show/hide
Query:  RNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLD
        +  CV+CG     LF+ YSPGN  L+KC+NC+ VADEY+ECE++I+ IDLIL K +AY HLLYN+++ +  + Q L WK  L++LLLD
Subjt:  RNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLD

Q5MK24 Protein ARV 19.8e-2444.53Show/hide
Query:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT
        + +RCV CGF    LF+ YSPGN+ L+KC NCK VADEYIECE MI+ IDLIL + + Y H+LYN I+   ++ Q L WK   ++LLLD           
Subjt:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT

Query:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI
               +R +LLR S+++SS + S  +
Subjt:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI

Q9HDX5 Protein arv11.6e-1043.75Show/hide
Query:  RCVQCGFGTNQLFLLYSPG--NMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYN
        +CV+CG   + L+  Y  G  N+ L +C NCK  AD+YIE +++++ +D+IL+K Q Y HLL+N
Subjt:  RCVQCGFGTNQLFLLYSPG--NMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYN

Arabidopsis top hitse value%identityAlignment
AT1G01020.1 Arv1-like protein7.0e-2544.53Show/hide
Query:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT
        + +RCV CGF    LF+ YSPGN+ L+KC NCK VADEYIECE MI+ IDLIL + + Y H+LYN I+   ++ Q L WK   ++LLLD           
Subjt:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT

Query:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI
               +R +LLR S+++SS + S  +
Subjt:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI

AT1G01020.2 Arv1-like protein7.0e-2544.53Show/hide
Query:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT
        + +RCV CGF    LF+ YSPGN+ L+KC NCK VADEYIECE MI+ IDLIL + + Y H+LYN I+   ++ Q L WK   ++LLLD           
Subjt:  NRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPT

Query:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI
               +R +LLR S+++SS + S  +
Subjt:  PGMSCPSHRYMLLRLSEKQSSMTFSSTI

AT4G01510.1 Arv1-like protein1.2e-2453.41Show/hide
Query:  RNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLD
        +  CV+CG     LF+ YSPGN  L+KC+NC+ VADEY+ECE++I+ IDLIL K +AY HLLYN+++ +  + Q L WK  L++LLLD
Subjt:  RNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGGATACAAACCGGAATCGTTGTGTGCAGTGTGGATTTGGAACCAATCAACTGTTCCTTCTGTACTCACCCGGGAACATGCATCTTGTGAAATGCGACAACTG
CAAATCCGTTGCGGACGAATACATTGAGTGCGAAATCATGATTGTTCTTATCGATTTAATACTGCTCAAGCGCCAGGCTTACACACATCTGCTCTACAACCTAATTGATA
CAGATTGCTTGTCTCGTCAGGATTTAGCGTGGAAGTTTGGACTTAGTTTTCTTCTTTTGGATGCTTGTATCCAATTCGGTCGGGAAGTCCCCACCCCTGGGATGTCTTGT
CCTTCTCACAGGTACATGCTTCTGAGACTAAGTGAGAAACAATCATCCATGACCTTTTCATCAACAATTGGGATCTGTCAAAAGGTTTGCAATCCCTCCTGTAACCATTT
TTTGGTTGCTTTAGGTGTTTCACGATGA
mRNA sequenceShow/hide mRNA sequence
CACTGTGAAAGGGAAGGAAGGAAGACGTGAGTCCATACCAAGCATTTTGCACACCTTCATTTCAGCCTTTTTCAATGATCTCACTCCCACCATTGCTACTTCGTCTCCTT
AACTGATTATAATCTGTGTGGTCGCATTGTGTTTCTCCTAATTGTTTATTTGTTGTTTAGTTTCTTCTGCTTCAAATCTCGTGGGGAGTGAATGACTTCCTCCCACGCTC
CTGCTGTTTTAACCCCAAAATTATGAATAGGAGAGTGGAGAGGAGTAGAAGTGCGTCGCAGTCTGGGCCGGTTAGGAATAAAAGCATGGGCCACTTTTTTATAGGCCCGA
AGTCTACGGTGATGCCGAAAGGCTTAACATCATCCAATTCCAGGTCGGGGTCGATAAAAGGGAAAGATAGATGTACTAGAAATCCTACAACTAAGATTTGAGTCAACTTG
GTCGACTGTATCGCTGGATTACTCTCTTCTCTTGGAATTCCTCAATGGGAAGGGATACAAACCGGAATCGTTGTGTGCAGTGTGGATTTGGAACCAATCAACTGTTCCTT
CTGTACTCACCCGGGAACATGCATCTTGTGAAATGCGACAACTGCAAATCCGTTGCGGACGAATACATTGAGTGCGAAATCATGATTGTTCTTATCGATTTAATACTGCT
CAAGCGCCAGGCTTACACACATCTGCTCTACAACCTAATTGATACAGATTGCTTGTCTCGTCAGGATTTAGCGTGGAAGTTTGGACTTAGTTTTCTTCTTTTGGATGCTT
GTATCCAATTCGGTCGGGAAGTCCCCACCCCTGGGATGTCTTGTCCTTCTCACAGGTACATGCTTCTGAGACTAAGTGAGAAACAATCATCCATGACCTTTTCATCAACA
ATTGGGATCTGTCAAAAGGTTTGCAATCCCTCCTGTAACCATTTTTTGGTTGCTTTAGGTGTTTCACGATGA
Protein sequenceShow/hide protein sequence
MGRDTNRNRCVQCGFGTNQLFLLYSPGNMHLVKCDNCKSVADEYIECEIMIVLIDLILLKRQAYTHLLYNLIDTDCLSRQDLAWKFGLSFLLLDACIQFGREVPTPGMSC
PSHRYMLLRLSEKQSSMTFSSTIGICQKVCNPSCNHFLVALGVSR