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Carg17734 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17734
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHigh chlorophyll fluorescence
Genome locationCarg_Chr04:17334125..17336775
RNA-Seq ExpressionCarg17734
SyntenyCarg17734
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601944.1 hypothetical protein SDJN03_07177, partial [Cucurbita argyrosperma subsp. sororia]8.5e-6798.62Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPFPPLPLVPARA FRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        LEELALNQAIMEEDEENKDGSSEISFE KPALPRTRNRPKREAEV
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

KAG7032638.1 hypothetical protein SDJN02_06688 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-68100Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

XP_022961614.1 uncharacterized protein LOC111462310 [Cucurbita moschata]1.4e-6698.61Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAE
        LEELALNQAIMEEDEENKDGSSEI FE KPALPRTRNRPKREAE
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAE

XP_022990673.1 uncharacterized protein LOC111487491 [Cucurbita maxima]9.7e-6396.5Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPF   PLVPARAFFRPSKLSPAVRFSGDPSAAR LRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREA
        LEELALNQAIMEEDEENKDGSSEISFE KPALPRTRNRPKREA
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREA

XP_023525740.1 uncharacterized protein LOC111789252 [Cucurbita pepo subsp. pepo]2.4e-6199.25Show/hide
Query:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        EEDEENKDGSSEISFE KPALPRTRNRPKREAEV
Subjt:  EEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

TrEMBL top hitse value%identityAlignment
A0A0A0KTR1 Uncharacterized protein4.0e-4680.6Show/hide
Query:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIM
        MAR LISTR FPF  LPL P R FFRPS  SP VRF  +PS +R LRVVTTRAGASTSSYIFAFSIP SLIL+T LTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        EEDE+ +DG SEISFE KP +PRTRNRPKREAEV
Subjt:  EEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

A0A6J1FJ66 uncharacterized protein LOC1114447533.1e-5187.41Show/hide
Query:  MARLLISTRA-FPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI
        MARLLISTRA FP   LP+ PARAFFRPSKLSPAVRF GD SA + LR+VTTRAGASTSSYIFAFSIPFSL+LVTALTALKIGDNLDKKFLEELALNQAI
Subjt:  MARLLISTRA-FPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI

Query:  MEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        MEEDEENKD  S ISFE KPALPRTRNRPKREAEV
Subjt:  MEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

A0A6J1HEK5 uncharacterized protein LOC1114623107.0e-6798.61Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAE
        LEELALNQAIMEEDEENKDGSSEI FE KPALPRTRNRPKREAE
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREAE

A0A6J1JTZ0 uncharacterized protein LOC1114874914.7e-6396.5Show/hide
Query:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
        MASPIPYTSEAMARLLISTRAFPF   PLVPARAFFRPSKLSPAVRFSGDPSAAR LRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF
Subjt:  MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKF

Query:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREA
        LEELALNQAIMEEDEENKDGSSEISFE KPALPRTRNRPKREA
Subjt:  LEELALNQAIMEEDEENKDGSSEISFEGKPALPRTRNRPKREA

A0A6J1K146 uncharacterized protein LOC1114896901.6e-5087.41Show/hide
Query:  MARLLISTRA-FPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI
        MARLLISTRA FP   LP+VPARA FRPSKLSPAVRF GD SA + LR+VTTRAGASTSSYIFAFSI FSLILVTALTALKIGDNLDKKFLEELALNQAI
Subjt:  MARLLISTRA-FPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI

Query:  MEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV
        MEEDEENKD  S ISFE KPALPRTRNRPKREAEV
Subjt:  MEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G31560.1 high chlorophyll fluorescence 1539.5e-1643.57Show/hide
Query:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRF----SGDPSAARALR--VVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELA
        MARL +S    P  P  +    +  +P    PA  F    +G     R +R   V TRAG STSSY+ AF+IP +LI  T  T++KI D LD+ FLE++A
Subjt:  MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRF----SGDPSAARALR--VVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELA

Query:  LNQAIMEEDEENKDGSSEISFEG---KPALPRTRNRPKRE
        LNQAI +  E+ ++G  +IS +    +P L RTRNRPKRE
Subjt:  LNQAIMEEDEENKDGSSEISFEG---KPALPRTRNRPKRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGTCCAATTCCTTACACGTCTGAAGCTATGGCCAGGCTCCTTATCTCCACCAGAGCCTTCCCCTTTCCCCCTCTTCCCCTGGTTCCGGCACGGGCATTCTTCAG
ACCCTCCAAATTGTCGCCGGCGGTCAGATTCTCCGGCGACCCATCAGCCGCCAGAGCCCTACGAGTGGTGACGACTCGTGCCGGTGCCAGCACCAGCAGTTACATCTTCG
CTTTCTCTATCCCCTTTTCTCTTATTCTCGTCACTGCCCTTACCGCTCTCAAAATCGGTGATAACCTGGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAATCAAGCCATA
ATGGAGGAAGATGAAGAGAACAAAGATGGTAGTTCAGAAATCTCTTTCGAAGGAAAACCCGCTCTTCCACGAACTCGAAACCGCCCTAAAAGGGAAGCCGAGGTCTAA
mRNA sequenceShow/hide mRNA sequence
TTTACATGACATCAAATTCAGCTTACAAGAATGGCCAGTCCAATTCCTTACACGTCTGAAGCTATGGCCAGGCTCCTTATCTCCACCAGAGCCTTCCCCTTTCCCCCTCT
TCCCCTGGTTCCGGCACGGGCATTCTTCAGACCCTCCAAATTGTCGCCGGCGGTCAGATTCTCCGGCGACCCATCAGCCGCCAGAGCCCTACGAGTGGTGACGACTCGTG
CCGGTGCCAGCACCAGCAGTTACATCTTCGCTTTCTCTATCCCCTTTTCTCTTATTCTCGTCACTGCCCTTACCGCTCTCAAAATCGGTGATAACCTGGACAAGAAGTTT
CTTGAGGAGCTTGCTCTTAATCAAGCCATAATGGAGGAAGATGAAGAGAACAAAGATGGTAGTTCAGAAATCTCTTTCGAAGGAAAACCCGCTCTTCCACGAACTCGAAA
CCGCCCTAAAAGGGAAGCCGAGGTCTAAATAGCAGCATAGATATTGGATGTGAACATAATCGGATCAGACAGGCAGAAAAATGGCTCAAAGGAACTAGAAAGCTTCTATG
GATACTGTATGTAACTTAGTTTTCTTCATCTTCTTCTTAATAATGATTAGTATAAACTTAGTTTGTATGATGAGTGAATTTAATGTTTAATATTATTGTTATATATCCTT
CAAATTGAAATATTTTCAAAAAGCAAATA
Protein sequenceShow/hide protein sequence
MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI
MEEDEENKDGSSEISFEGKPALPRTRNRPKREAEV