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Carg17804 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17804
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChorein_N domain-containing protein
Genome locationCarg_Chr10:4030577..4030883
RNA-Seq ExpressionCarg17804
SyntenyCarg17804
Gene Ontology termsNA
InterPro domainsIPR026854 - Vacuolar protein sorting-associated protein 13-like, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590108.1 Vacuolar protein sorting-associated protein 13, partial [Cucurbita argyrosperma subsp. sororia]2.2e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

KAG7023773.1 hypothetical protein SDJN02_14799, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-37100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNASAVGLQSSRIDANTSLCSYKMILGMYDPWLSGMRSLDKWVAAFLLY
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNASAVGLQSSRIDANTSLCSYKMILGMYDPWLSGMRSLDKWVAAFLLY
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNASAVGLQSSRIDANTSLCSYKMILGMYDPWLSGMRSLDKWVAAFLLY

XP_022960657.1 uncharacterized protein LOC111461381 isoform X1 [Cucurbita moschata]2.2e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

XP_022988633.1 uncharacterized protein LOC111485823 isoform X1 [Cucurbita maxima]2.2e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

XP_023516584.1 uncharacterized protein LOC111780422 isoform X1 [Cucurbita pepo subsp. pepo]2.2e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

TrEMBL top hitse value%identityAlignment
A0A0A0M0J0 Chorein_N domain-containing protein6.8e-0896.88Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFE LVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X16.8e-0896.88Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFE LVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X25.8e-0793.75Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFE LV QLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

A0A6J1H814 uncharacterized protein LOC111461381 isoform X11.1e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

A0A6J1JMV4 uncharacterized protein LOC111485823 isoform X11.1e-08100Show/hide
Query:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
        MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN
Subjt:  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)1.8e-0564.29Show/hide
Query:  LLVGYLGRYVKDIQKEKLKITFWNASAV
        LL+GYLGRY+KDIQK++LKI+ WN   +
Subjt:  LLVGYLGRYVKDIQKEKLKITFWNASAV

AT5G24740.2 Protein of unknown function (DUF1162)1.8e-0564.29Show/hide
Query:  LLVGYLGRYVKDIQKEKLKITFWNASAV
        LL+GYLGRY+KDIQK++LKI+ WN   +
Subjt:  LLVGYLGRYVKDIQKEKLKITFWNASAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAAAGACTTGTTGGACAGTTACTTGTGGGTTATTTGGGCAGATATGTCAAGGATATTCAGAAGGAGAAGCTGAAGATTACGTTTTGGAACGCTTCGGCGGTGGG
GCTGCAATCGTCTCGAATTGATGCTAATACTTCCTTATGCTCTTATAAAATGATCCTTGGAATGTATGATCCATGGCTATCTGGAATGCGCTCCTTGGACAAATGGGTCG
CTGCTTTTCTATTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAAAGACTTGTTGGACAGTTACTTGTGGGTTATTTGGGCAGATATGTCAAGGATATTCAGAAGGAGAAGCTGAAGATTACGTTTTGGAACGCTTCGGCGGTGGG
GCTGCAATCGTCTCGAATTGATGCTAATACTTCCTTATGCTCTTATAAAATGATCCTTGGAATGTATGATCCATGGCTATCTGGAATGCGCTCCTTGGACAAATGGGTCG
CTGCTTTTCTATTATATTGA
Protein sequenceShow/hide protein sequence
MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNASAVGLQSSRIDANTSLCSYKMILGMYDPWLSGMRSLDKWVAAFLLY